Variant report

Variant	rs343862
Chromosome Location	chr4:86643908-86643909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10004914	1.00[AMR][1000 genomes]
rs10017673	1.00[AMR][1000 genomes]
rs10018270	1.00[AMR][1000 genomes]
rs10024305	1.00[AMR][1000 genomes]
rs11097067	1.00[AMR][1000 genomes]
rs11941635	1.00[AMR][1000 genomes]
rs13110649	0.85[LWK][hapmap];0.82[MKK][hapmap];1.00[AMR][1000 genomes]
rs1482086	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs189357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28384086	1.00[AMR][1000 genomes]
rs28397866	1.00[AMR][1000 genomes]
rs28421282	1.00[AMR][1000 genomes]
rs28478283	1.00[AMR][1000 genomes]
rs28481580	1.00[AMR][1000 genomes]
rs28482943	1.00[AMR][1000 genomes]
rs28503231	1.00[AMR][1000 genomes]
rs28510473	1.00[AMR][1000 genomes]
rs28528165	1.00[AMR][1000 genomes]
rs28582783	1.00[AMR][1000 genomes]
rs28625743	1.00[AMR][1000 genomes]
rs28646131	1.00[AMR][1000 genomes]
rs28655099	1.00[AMR][1000 genomes]
rs28809183	1.00[AMR][1000 genomes]
rs28843174	1.00[AMR][1000 genomes]
rs2904068	1.00[GIH][hapmap]
rs343857	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343858	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343861	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343863	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343865	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4292320	0.94[YRI][hapmap];1.00[AFR][1000 genomes]
rs4315779	0.86[MKK][hapmap];1.00[AMR][1000 genomes]
rs4343717	1.00[AMR][1000 genomes]
rs4362811	1.00[AMR][1000 genomes]
rs4693125	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6531853	1.00[AMR][1000 genomes]
rs6531855	1.00[AMR][1000 genomes]
rs6531857	0.86[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs6531858	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6531859	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6531860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6829248	1.00[AMR][1000 genomes]
rs7376882	1.00[AMR][1000 genomes]
rs7659017	0.86[MKK][hapmap];1.00[AMR][1000 genomes]
rs7674538	1.00[AMR][1000 genomes]
rs7682809	1.00[AMR][1000 genomes]
rs9999508	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	esv274900	chr4:86643742-86644130	Weak transcription Strong transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86632000-86647000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86633600-86644800	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:86638000-86646600	Weak transcription	Small Intestine	intestine
4	chr4:86638200-86646600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:86639000-86644800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:86639400-86645400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:86639400-86646800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:86639600-86645400	Weak transcription	NHLF	lung
9	chr4:86639600-86646200	Weak transcription	Fetal Lung	lung
10	chr4:86641400-86644400	Enhancers	HSMM	muscle
11	chr4:86641600-86644400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:86641600-86646800	Weak transcription	Ovary	ovary
13	chr4:86642000-86645400	Strong transcription	Primary B cells from peripheral blood	blood
14	chr4:86642000-86646400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:86642000-86646600	Weak transcription	Osteobl	bone
16	chr4:86642200-86646600	Weak transcription	Fetal Heart	heart
17	chr4:86642400-86646800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:86642600-86646200	Weak transcription	Adipose Nuclei	Adipose
19	chr4:86642600-86646800	Weak transcription	Placenta	Placenta
20	chr4:86643000-86644400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:86643000-86645200	Strong transcription	Primary B cells from cord blood	blood
22	chr4:86643200-86644000	Strong transcription	K562	blood
23	chr4:86643200-86646000	Weak transcription	A549	lung
24	chr4:86643200-86646600	Weak transcription	Pancreas	Pancrea
25	chr4:86643400-86644800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr4:86643400-86645400	Enhancers	HSMMtube	muscle
27	chr4:86643600-86644000	Flanking Active TSS	NHDF-Ad	bronchial
28	chr4:86643600-86644400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr4:86643600-86644600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:86643600-86644800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:86643600-86645000	Enhancers	Muscle Satellite Cultured Cells	--

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