Variant report

Variant	rs2873628
Chromosome Location	chr11:63623404-63623405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63623116..63625198-chr11:63627070..63629922,2	MCF-7	breast:
2	chr11:63618262..63620872-chr11:63622247..63624300,2	MCF-7	breast:
3	chr11:63614265..63617185-chr11:63623129..63625400,2	MCF-7	breast:
4	chr11:63621538..63623574-chr11:63638345..63640318,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs224174	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs368421	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4472946	1.00[AMR][1000 genomes]
rs9326429	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63609600-63629600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:63610200-63633200	Weak transcription	Fetal Brain Male	brain
3	chr11:63611800-63629800	Weak transcription	Aorta	Aorta
4	chr11:63613200-63625600	Weak transcription	HUVEC	blood vessel
5	chr11:63613200-63626200	Weak transcription	NHLF	lung
6	chr11:63613200-63632400	Weak transcription	Fetal Brain Female	brain
7	chr11:63613200-63633000	Weak transcription	HSMM	muscle
8	chr11:63613800-63625400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:63615800-63625400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:63615800-63628200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:63615800-63633200	Weak transcription	HMEC	breast
12	chr11:63615800-63634800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:63615800-63636000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:63615800-63636000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:63615800-63636000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:63616800-63624800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:63617000-63629600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:63617200-63629400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:63618600-63625800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:63618800-63623600	Weak transcription	Pancreas	Pancrea
21	chr11:63618800-63624000	Weak transcription	Gastric	stomach
22	chr11:63618800-63624800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:63618800-63624800	Weak transcription	Spleen	Spleen
24	chr11:63618800-63625600	Weak transcription	Left Ventricle	heart
25	chr11:63618800-63625800	Weak transcription	Colonic Mucosa	Colon
26	chr11:63618800-63626600	Weak transcription	Lung	lung
27	chr11:63618800-63629000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:63618800-63629000	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:63619000-63623600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:63619000-63632600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:63619200-63624800	Weak transcription	Hela-S3	cervix
32	chr11:63619200-63626000	Weak transcription	Osteobl	bone
33	chr11:63619200-63628400	Weak transcription	NHEK	skin
34	chr11:63619200-63629200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:63619200-63629200	Weak transcription	Thymus	Thymus
36	chr11:63619200-63638000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:63619400-63625400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:63619400-63626200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:63619400-63626200	Weak transcription	Right Ventricle	heart
40	chr11:63619400-63629600	Weak transcription	Liver	Liver
41	chr11:63619400-63629600	Weak transcription	Esophagus	oesophagus
42	chr11:63619400-63639400	Weak transcription	Ovary	ovary
43	chr11:63619600-63623600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:63619600-63625800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:63619600-63626000	Weak transcription	Brain Anterior Caudate	brain
46	chr11:63619600-63626000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:63619600-63626200	Weak transcription	Brain Angular Gyrus	brain
48	chr11:63619600-63629600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:63619600-63629800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:63619600-63630200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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