Variant report

Variant	rs9326429
Chromosome Location	chr11:63596093-63596094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63595792..63597844-chr11:63752705..63754883,2	MCF-7	breast:
2	chr11:63534833..63536648-chr11:63595467..63599142,3	MCF-7	breast:
3	chr11:63595860..63598960-chr11:63603079..63605132,3	MCF-7	breast:
4	chr11:63595369..63597909-chr11:63603609..63605330,2	MCF-7	breast:
5	chr11:63580628..63582590-chr11:63595009..63597871,2	K562	blood:
6	chr11:63594404..63596969-chr11:63711957..63713589,2	MCF-7	breast:
7	chr11:63580137..63581859-chr11:63595267..63597518,2	MCF-7	breast:
8	chr11:63539161..63540778-chr11:63594403..63596443,2	K562	blood:
9	chr11:63595602..63598519-chr11:63603964..63606934,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000167770	Chromatin interaction
ENSG00000072518	Chromatin interaction
ENSG00000168005	Chromatin interaction
ENSG00000255651	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs224174	1.00[AMR][1000 genomes]
rs2873628	1.00[AMR][1000 genomes]
rs368421	1.00[AMR][1000 genomes]
rs4472946	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63582200-63604600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63582400-63604800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:63582600-63604800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:63582600-63604800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:63582800-63596400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:63583000-63596200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:63583000-63596400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:63583000-63596800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:63583000-63597000	Strong transcription	Brain Cingulate Gyrus	brain
10	chr11:63583000-63597200	Strong transcription	Fetal Muscle Leg	muscle
11	chr11:63583200-63596200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:63583200-63596200	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:63583200-63596200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:63583200-63596400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:63583200-63597200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:63583400-63596400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:63583400-63596400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:63583400-63596400	Strong transcription	Fetal Intestine Small	intestine
19	chr11:63583600-63596200	Strong transcription	Brain Hippocampus Middle	brain
20	chr11:63583600-63596400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:63583600-63596400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr11:63583600-63596800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:63583600-63604600	Weak transcription	Fetal Brain Male	brain
24	chr11:63583800-63596400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:63583800-63596400	Strong transcription	Adipose Nuclei	Adipose
26	chr11:63583800-63596400	Strong transcription	Brain Anterior Caudate	brain
27	chr11:63583800-63596400	Strong transcription	Fetal Intestine Large	intestine
28	chr11:63583800-63596600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:63584200-63596200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:63584200-63597200	Strong transcription	Fetal Brain Female	brain
31	chr11:63584200-63598000	Strong transcription	Fetal Stomach	stomach
32	chr11:63584200-63598000	Strong transcription	Lung	lung
33	chr11:63584200-63604600	Weak transcription	Fetal Heart	heart
34	chr11:63584200-63604800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:63584400-63597200	Strong transcription	Stomach Smooth Muscle	stomach
36	chr11:63584400-63598000	Strong transcription	Brain Germinal Matrix	brain
37	chr11:63584400-63598400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:63585200-63596400	Strong transcription	Dnd41	blood
39	chr11:63585400-63598000	Strong transcription	Spleen	Spleen
40	chr11:63585600-63596800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:63588800-63604800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:63589200-63605000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:63589400-63597400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:63590600-63598000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:63590600-63604600	Weak transcription	K562	blood
46	chr11:63590800-63605200	Weak transcription	Small Intestine	intestine
47	chr11:63591000-63596400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:63591000-63604600	Weak transcription	HMEC	breast
49	chr11:63591000-63604800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:63592000-63604600	Weak transcription	Rectal Mucosa Donor 31	rectum

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