Variant report

Variant	rs28736699
Chromosome Location	chr15:40347435-40347436
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40337120..40337630-chr15:40347336..40347926,2	MCF-7	breast:
2	chr15:40345820..40349466-chr15:40390060..40393212,4	MCF-7	breast:
3	chr15:40340027..40343155-chr15:40345939..40349280,3	K562	blood:
4	chr15:40347197..40349359-chr15:40378804..40381758,2	MCF-7	breast:
5	chr15:40345188..40347486-chr15:40391657..40395509,4	MCF-7	breast:
6	chr15:40343717..40348357-chr15:40394391..40397717,7	MCF-7	breast:
7	chr15:40338929..40343184-chr15:40345688..40348186,4	MCF-7	breast:
8	chr15:40329665..40331451-chr15:40346942..40348651,2	MCF-7	breast:
9	chr15:40341039..40342869-chr15:40345945..40347954,2	MCF-7	breast:
10	chr15:40346553..40348911-chr15:40378525..40382639,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259409	Chromatin interaction
ENSG00000140319	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1010879	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070250	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11631442	1.00[ASN][1000 genomes]
rs16924528	1.00[ASN][1000 genomes]
rs17722502	1.00[ASN][1000 genomes]
rs17722526	1.00[ASN][1000 genomes]
rs17723133	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2412478	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444847	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28515996	1.00[ASN][1000 genomes]
rs28826672	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35781999	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923235	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4497657	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924410	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4924413	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924417	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62004114	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62004158	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71132133	1.00[ASN][1000 genomes]
rs7183977	1.00[ASN][1000 genomes]
rs72731415	1.00[ASN][1000 genomes]
rs7497289	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026641	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs937213	1.00[ASN][1000 genomes]
rs9919974	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40337800-40355600	Weak transcription	Brain Angular Gyrus	brain
2	chr15:40337800-40355600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:40339800-40347600	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:40340600-40347600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:40340800-40349600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr15:40342800-40348600	Enhancers	Colonic Mucosa	Colon
7	chr15:40343000-40348000	Enhancers	Fetal Intestine Large	intestine
8	chr15:40343200-40347600	Weak transcription	Right Atrium	heart
9	chr15:40343200-40348200	Enhancers	Duodenum Mucosa	Duodenum
10	chr15:40343600-40348600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:40343600-40355400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:40344000-40353200	Weak transcription	Fetal Lung	lung
13	chr15:40344200-40348800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:40344400-40348800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:40344600-40349800	Enhancers	Fetal Muscle Leg	muscle
16	chr15:40344800-40348200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr15:40344800-40348600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:40345200-40348200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:40345200-40348600	Enhancers	HSMM	muscle
20	chr15:40345200-40348800	Enhancers	Primary B cells from cord blood	blood
21	chr15:40345200-40348800	Enhancers	Primary B cells from peripheral blood	blood
22	chr15:40345200-40348800	Enhancers	Primary hematopoietic stem cells	blood
23	chr15:40345200-40348800	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr15:40345200-40349000	Enhancers	Primary T cells fromperipheralblood	blood
25	chr15:40345400-40347800	Flanking Active TSS	Dnd41	blood
26	chr15:40345400-40347800	Enhancers	Osteobl	bone
27	chr15:40345400-40348400	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr15:40345400-40348600	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr15:40345400-40348800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr15:40345400-40349000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr15:40345400-40349000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr15:40345600-40347600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr15:40345600-40347800	Enhancers	Fetal Muscle Trunk	muscle
34	chr15:40345600-40348400	Flanking Active TSS	Fetal Thymus	thymus
35	chr15:40345600-40348600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:40345600-40348800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr15:40345600-40358800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:40345800-40348000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:40345800-40348200	Genic enhancers	Fetal Intestine Small	intestine
40	chr15:40345800-40348200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr15:40345800-40348200	Enhancers	NHDF-Ad	bronchial
42	chr15:40345800-40348400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:40345800-40348400	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr15:40345800-40348600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:40345800-40348800	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr15:40345800-40348800	Enhancers	Placenta	Placenta
47	chr15:40346000-40348000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:40346000-40348600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:40346000-40348600	Enhancers	NHLF	lung
50	chr15:40346000-40348800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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