Variant report

Variant	rs9919974
Chromosome Location	chr15:40337462-40337463
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40336203..40339126-chr15:40530089..40532652,2	MCF-7	breast:
2	chr15:40336630..40337966-chr15:40566528..40567460,17	K562	blood:
3	chr15:40331030..40333143-chr15:40336007..40339016,3	MCF-7	breast:
4	chr15:40336997..40337918-chr15:40509509..40510015,2	MCF-7	breast:
5	chr15:40336254..40340864-chr15:40394731..40398446,8	MCF-7	breast:
6	chr15:40335759..40338053-chr15:40359943..40362529,2	MCF-7	breast:
7	chr15:40337190..40339316-chr15:40452103..40454562,3	K562	blood:
8	chr15:40331646..40335428-chr15:40336590..40339827,4	K562	blood:
9	chr15:40329946..40331634-chr15:40336636..40339061,3	K562	blood:
10	chr15:40329737..40332580-chr15:40336644..40338939,3	MCF-7	breast:
11	chr15:40337354..40339667-chr15:40397161..40399729,4	MCF-7	breast:
12	chr15:40336937..40340971-chr15:40343981..40345656,3	K562	blood:
13	chr15:40316792..40319145-chr15:40336585..40338898,2	K562	blood:
14	chr15:40337227..40337927-chr15:40398894..40399761,3	MCF-7	breast:
15	chr15:40337054..40338155-chr15:40566547..40567480,5	MCF-7	breast:
16	chr15:40337209..40337943-chr15:40564970..40565576,2	MCF-7	breast:
17	chr15:40329946..40333146-chr15:40335941..40339061,6	K562	blood:
18	chr15:40335189..40340116-chr15:40397333..40401366,6	K562	blood:
19	chr15:40337011..40337513-chr15:40509281..40510064,2	MCF-7	breast:
20	chr15:40337120..40337630-chr15:40347336..40347926,2	MCF-7	breast:
21	chr15:40335525..40337538-chr15:40398458..40401468,3	MCF-7	breast:
22	chr15:40336205..40337868-chr15:40391134..40392725,2	K562	blood:
23	chr15:40337344..40339688-chr15:40344036..40346311,2	K562	blood:
24	chr15:40336985..40337912-chr15:40566972..40567506,2	MCF-7	breast:
25	chr15:40337094..40338102-chr15:40509094..40510270,4	K562	blood:
26	chr15:40336782..40338579-chr15:40387773..40390430,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259288	Chromatin interaction
ENSG00000104081	Chromatin interaction
ENSG00000156970	Chromatin interaction
ENSG00000137843	Chromatin interaction
ENSG00000140319	Chromatin interaction
ENSG00000248508	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1010879	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070250	0.87[EUR][1000 genomes]
rs11631442	1.00[ASN][1000 genomes]
rs16924528	1.00[ASN][1000 genomes]
rs17722502	1.00[ASN][1000 genomes]
rs17722526	1.00[ASN][1000 genomes]
rs17723133	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2412478	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444847	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28515996	1.00[ASN][1000 genomes]
rs28736699	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28826672	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35781999	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923235	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4497657	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924410	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4924413	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924417	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62004114	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62004158	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71132133	1.00[ASN][1000 genomes]
rs7183977	1.00[ASN][1000 genomes]
rs72731415	1.00[ASN][1000 genomes]
rs7497289	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749748	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026641	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs937213	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40331800-40339400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:40332000-40339800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:40332400-40339400	Weak transcription	Gastric	stomach
4	chr15:40332400-40339400	Weak transcription	Right Atrium	heart
5	chr15:40332600-40337800	Weak transcription	Small Intestine	intestine
6	chr15:40332800-40338000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:40333400-40337800	Weak transcription	Left Ventricle	heart
8	chr15:40336200-40343400	Enhancers	Fetal Heart	heart
9	chr15:40336400-40338000	Enhancers	Brain Substantia Nigra	brain
10	chr15:40336400-40338200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:40336400-40338200	Enhancers	Dnd41	blood
12	chr15:40336400-40338800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:40336600-40338200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:40336600-40338200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:40336600-40338200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:40336600-40339400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr15:40336600-40340600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:40336600-40341000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:40336600-40341000	Enhancers	HSMMtube	muscle
20	chr15:40336600-40341200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr15:40336600-40341800	Enhancers	Fetal Thymus	thymus
22	chr15:40336600-40342800	Enhancers	Spleen	Spleen
23	chr15:40336600-40343000	Enhancers	Primary B cells from peripheral blood	blood
24	chr15:40336800-40337600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:40336800-40337600	Enhancers	Rectal Smooth Muscle	rectum
26	chr15:40336800-40337600	Flanking Active TSS	HepG2	liver
27	chr15:40336800-40337800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:40336800-40337800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr15:40336800-40337800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:40336800-40337800	Flanking Active TSS	Hela-S3	cervix
31	chr15:40336800-40338000	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr15:40336800-40338200	Enhancers	Fetal Intestine Large	intestine
33	chr15:40336800-40338400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr15:40336800-40338600	Enhancers	Fetal Muscle Leg	muscle
35	chr15:40336800-40341000	Enhancers	Fetal Stomach	stomach
36	chr15:40336800-40341600	Enhancers	Placenta	Placenta
37	chr15:40336800-40342800	Enhancers	Primary B cells from cord blood	blood
38	chr15:40336800-40343400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:40337000-40337600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:40337000-40337600	Enhancers	Fetal Brain Male	brain
41	chr15:40337000-40337600	Enhancers	Fetal Kidney	kidney
42	chr15:40337000-40337600	Enhancers	Pancreas	Pancrea
43	chr15:40337000-40337600	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr15:40337000-40337600	Enhancers	NHDF-Ad	bronchial
45	chr15:40337000-40337600	Flanking Active TSS	NHEK	skin
46	chr15:40337000-40337800	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr15:40337000-40337800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:40337000-40337800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:40337000-40337800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:40337000-40337800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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