Variant report

Variant	rs28737315
Chromosome Location	chr4:101732767-101732768
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10008442	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13102501	0.86[EUR][1000 genomes]
rs13118441	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13122395	0.86[EUR][1000 genomes]
rs13130138	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34669236	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101731600-101733200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:101731800-101732800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:101731800-101733000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:101731800-101733200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:101731800-101733200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:101732000-101732800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr4:101732000-101732800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr4:101732000-101732800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:101732000-101733200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:101732200-101732800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:101732600-101733000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:101732600-101733000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr4:101732600-101733400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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