Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10008442	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10013582	0.94[ASN][1000 genomes]
rs10013744	0.94[ASN][1000 genomes]
rs10516476	0.94[ASN][1000 genomes]
rs13102501	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13122395	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13130138	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13131485	0.94[ASN][1000 genomes]
rs1390930	0.94[ASN][1000 genomes]
rs1390933	0.94[ASN][1000 genomes]
rs1390934	0.94[ASN][1000 genomes]
rs17030481	0.94[ASN][1000 genomes]
rs17030500	0.94[ASN][1000 genomes]
rs17030502	0.94[ASN][1000 genomes]
rs28406271	0.84[ASN][1000 genomes]
rs28701141	0.94[ASN][1000 genomes]
rs28737315	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34669236	0.88[EUR][1000 genomes]
rs35540482	0.94[ASN][1000 genomes]
rs35807447	0.94[ASN][1000 genomes]
rs58690640	0.94[ASN][1000 genomes]
rs58926631	0.94[ASN][1000 genomes]
rs6419156	0.94[ASN][1000 genomes]
rs6532903	0.94[ASN][1000 genomes]
rs6831914	0.94[ASN][1000 genomes]
rs7655125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7681227	0.94[ASN][1000 genomes]
rs7689536	0.94[ASN][1000 genomes]
rs9991123	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13118441	NHEDC2	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101726800-101730200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:101726800-101732000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:101726800-101732000	Weak transcription	Brain Germinal Matrix	brain
4	chr4:101727200-101732200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:101727400-101730200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:101727400-101731600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:101727400-101732600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:101727400-101732600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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