Variant report

Variant	rs9991123
Chromosome Location	chr4:101763963-101763964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10008442	0.89[ASN][1000 genomes]
rs10013582	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10013744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516476	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13102501	0.89[ASN][1000 genomes]
rs13118441	0.89[ASN][1000 genomes]
rs13122395	0.94[ASN][1000 genomes]
rs13130138	0.89[ASN][1000 genomes]
rs13131485	0.94[ASN][1000 genomes]
rs1390930	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1390933	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1390934	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17030481	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17030500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17030502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28701141	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35540482	0.94[ASN][1000 genomes]
rs35807447	0.94[ASN][1000 genomes]
rs58690640	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58926631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59836380	1.00[EUR][1000 genomes]
rs6419156	0.94[ASN][1000 genomes]
rs6532903	0.94[ASN][1000 genomes]
rs6831914	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7655125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7658024	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7681227	0.94[ASN][1000 genomes]
rs7689536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101759800-101765200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:101759800-101765200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:101760000-101765200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:101760200-101770000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:101763600-101764200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:101763600-101764800	Enhancers	Primary neutrophils fromperipheralblood	blood

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