Variant report

Variant	rs59836380
Chromosome Location	chr4:101741999-101742000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10013582	1.00[EUR][1000 genomes]
rs10013744	1.00[EUR][1000 genomes]
rs10516476	1.00[EUR][1000 genomes]
rs1390930	1.00[EUR][1000 genomes]
rs1390933	1.00[EUR][1000 genomes]
rs1390934	1.00[EUR][1000 genomes]
rs17030481	1.00[EUR][1000 genomes]
rs17030500	1.00[EUR][1000 genomes]
rs17030502	1.00[EUR][1000 genomes]
rs28701141	1.00[EUR][1000 genomes]
rs34669236	1.00[ASN][1000 genomes]
rs58690640	1.00[EUR][1000 genomes]
rs58926631	1.00[EUR][1000 genomes]
rs6831914	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7689536	1.00[EUR][1000 genomes]
rs9991123	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101740000-101745600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:101740800-101742000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:101741200-101742600	Enhancers	GM12878-XiMat	blood
4	chr4:101741200-101744600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:101741800-101742400	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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