Variant report

Variant	rs58690640
Chromosome Location	chr4:101762378-101762379
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10008442	0.94[ASN][1000 genomes]
rs10013582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10013744	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13102501	0.94[ASN][1000 genomes]
rs13118441	0.94[ASN][1000 genomes]
rs13122395	1.00[ASN][1000 genomes]
rs13130138	0.94[ASN][1000 genomes]
rs13131485	1.00[ASN][1000 genomes]
rs1390930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390933	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030500	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030502	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701141	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35540482	1.00[ASN][1000 genomes]
rs35807447	1.00[ASN][1000 genomes]
rs58926631	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59836380	1.00[EUR][1000 genomes]
rs6419156	1.00[ASN][1000 genomes]
rs6532903	1.00[ASN][1000 genomes]
rs6831914	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655125	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7658024	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7681227	1.00[ASN][1000 genomes]
rs7689536	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991123	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101759800-101765200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:101759800-101765200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:101760000-101765200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:101760200-101770000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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