Variant report

Variant	rs7658024
Chromosome Location	chr4:101756893-101756894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10007981	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10013744	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10020201	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10516476	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13102608	1.00[ASN][1000 genomes]
rs13120027	1.00[ASN][1000 genomes]
rs13132028	1.00[ASN][1000 genomes]
rs13138965	1.00[ASN][1000 genomes]
rs1390930	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1390934	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17030500	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17030502	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17030522	1.00[ASN][1000 genomes]
rs17030525	1.00[ASN][1000 genomes]
rs17030528	1.00[ASN][1000 genomes]
rs17030531	1.00[ASN][1000 genomes]
rs17030534	1.00[ASN][1000 genomes]
rs17030541	1.00[ASN][1000 genomes]
rs17030548	1.00[ASN][1000 genomes]
rs17030550	1.00[ASN][1000 genomes]
rs17030551	1.00[ASN][1000 genomes]
rs17030553	1.00[ASN][1000 genomes]
rs17030554	1.00[ASN][1000 genomes]
rs17030557	1.00[ASN][1000 genomes]
rs17030560	1.00[ASN][1000 genomes]
rs17030619	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17030636	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28444682	1.00[ASN][1000 genomes]
rs28701141	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4428287	1.00[ASN][1000 genomes]
rs58690640	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58926631	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59485348	1.00[ASN][1000 genomes]
rs62307686	1.00[ASN][1000 genomes]
rs6830350	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6831146	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6835230	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6835957	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6840437	1.00[ASN][1000 genomes]
rs6853319	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6853796	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7655125	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7659308	1.00[ASN][1000 genomes]
rs7667871	1.00[ASN][1000 genomes]
rs7676752	1.00[ASN][1000 genomes]
rs7677279	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7677774	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7678087	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7678230	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7689536	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9991123	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101745400-101758800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:101753000-101758000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:101755000-101758200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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