Variant report

Variant	rs17030554
Chromosome Location	chr4:101798398-101798399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101795546..101798516-chr4:101804776..101806595,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10007981	0.92[ASN][1000 genomes]
rs10020201	0.84[ASN][1000 genomes]
rs13102608	1.00[ASN][1000 genomes]
rs13120027	1.00[ASN][1000 genomes]
rs13132028	1.00[ASN][1000 genomes]
rs13138965	1.00[ASN][1000 genomes]
rs17030522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030525	1.00[ASN][1000 genomes]
rs17030528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030534	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030619	0.92[ASN][1000 genomes]
rs17030636	0.92[ASN][1000 genomes]
rs28444682	1.00[ASN][1000 genomes]
rs4428287	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59485348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62307686	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6830350	0.92[ASN][1000 genomes]
rs6831146	0.92[ASN][1000 genomes]
rs6835230	0.92[ASN][1000 genomes]
rs6835957	0.92[ASN][1000 genomes]
rs6840437	1.00[ASN][1000 genomes]
rs6853319	0.92[ASN][1000 genomes]
rs6853796	0.92[ASN][1000 genomes]
rs7658024	1.00[ASN][1000 genomes]
rs7659308	1.00[ASN][1000 genomes]
rs7667871	1.00[ASN][1000 genomes]
rs7676752	1.00[ASN][1000 genomes]
rs7677279	0.92[ASN][1000 genomes]
rs7677774	0.92[ASN][1000 genomes]
rs7678087	0.92[ASN][1000 genomes]
rs7678230	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101796400-101798400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:101797000-101798400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:101797400-101798400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:101797400-101798400	Enhancers	NHEK	skin
5	chr4:101797600-101798400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:101798000-101800600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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