Variant report
| Variant | rs7659308 |
|---|---|
| Chromosome Location | chr4:101751566-101751567 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:101747895..101750481-chr4:101750941..101753813,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10007981 | 0.92[ASN][1000 genomes] |
| rs10020201 | 0.84[ASN][1000 genomes] |
| rs13102608 | 1.00[ASN][1000 genomes] |
| rs13120027 | 1.00[ASN][1000 genomes] |
| rs13132028 | 1.00[ASN][1000 genomes] |
| rs13138965 | 1.00[ASN][1000 genomes] |
| rs17030522 | 1.00[ASN][1000 genomes] |
| rs17030525 | 1.00[ASN][1000 genomes] |
| rs17030528 | 1.00[ASN][1000 genomes] |
| rs17030531 | 1.00[ASN][1000 genomes] |
| rs17030534 | 1.00[ASN][1000 genomes] |
| rs17030541 | 1.00[ASN][1000 genomes] |
| rs17030548 | 1.00[ASN][1000 genomes] |
| rs17030550 | 1.00[ASN][1000 genomes] |
| rs17030551 | 1.00[ASN][1000 genomes] |
| rs17030553 | 1.00[ASN][1000 genomes] |
| rs17030554 | 1.00[ASN][1000 genomes] |
| rs17030557 | 1.00[ASN][1000 genomes] |
| rs17030560 | 1.00[ASN][1000 genomes] |
| rs17030619 | 0.92[ASN][1000 genomes] |
| rs17030636 | 0.92[ASN][1000 genomes] |
| rs28444682 | 1.00[ASN][1000 genomes] |
| rs4428287 | 1.00[ASN][1000 genomes] |
| rs59485348 | 1.00[ASN][1000 genomes] |
| rs62307686 | 1.00[ASN][1000 genomes] |
| rs6830350 | 0.92[ASN][1000 genomes] |
| rs6831146 | 0.92[ASN][1000 genomes] |
| rs6835230 | 0.92[ASN][1000 genomes] |
| rs6835957 | 0.92[ASN][1000 genomes] |
| rs6840437 | 1.00[ASN][1000 genomes] |
| rs6853319 | 0.92[ASN][1000 genomes] |
| rs6853796 | 0.92[ASN][1000 genomes] |
| rs7658024 | 1.00[ASN][1000 genomes] |
| rs7667871 | 1.00[ASN][1000 genomes] |
| rs7676752 | 1.00[ASN][1000 genomes] |
| rs7677279 | 0.92[ASN][1000 genomes] |
| rs7677774 | 0.92[ASN][1000 genomes] |
| rs7678087 | 0.92[ASN][1000 genomes] |
| rs7678230 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931418 | chr4:101500167-102443207 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:101745400-101758800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr4:101750400-101753600 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
