Variant report

Variant	rs6835230
Chromosome Location	chr4:101847712-101847713
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101845683..101848503-chr4:101850770..101852386,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10001284	0.98[AFR][1000 genomes]
rs10001589	0.98[AFR][1000 genomes]
rs10001626	0.98[AFR][1000 genomes]
rs10007981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10020201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10023612	0.98[AFR][1000 genomes]
rs10024061	0.98[AFR][1000 genomes]
rs10025741	0.91[AFR][1000 genomes]
rs10025843	0.86[AFR][1000 genomes]
rs10028145	0.84[AFR][1000 genomes]
rs10049984	0.98[AFR][1000 genomes]
rs12331027	0.98[AFR][1000 genomes]
rs13102608	0.92[ASN][1000 genomes]
rs13120027	0.92[ASN][1000 genomes]
rs13132028	0.92[ASN][1000 genomes]
rs13138965	0.92[ASN][1000 genomes]
rs17030522	0.92[ASN][1000 genomes]
rs17030525	0.92[ASN][1000 genomes]
rs17030528	0.92[ASN][1000 genomes]
rs17030531	0.92[ASN][1000 genomes]
rs17030534	0.92[ASN][1000 genomes]
rs17030541	0.92[ASN][1000 genomes]
rs17030548	0.92[ASN][1000 genomes]
rs17030550	0.92[ASN][1000 genomes]
rs17030551	0.92[ASN][1000 genomes]
rs17030553	0.92[ASN][1000 genomes]
rs17030554	0.92[ASN][1000 genomes]
rs17030557	0.92[ASN][1000 genomes]
rs17030560	0.92[ASN][1000 genomes]
rs17030619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28379569	0.98[AFR][1000 genomes]
rs28444682	0.92[ASN][1000 genomes]
rs28473421	0.98[AFR][1000 genomes]
rs28529062	0.98[AFR][1000 genomes]
rs28570164	0.97[AFR][1000 genomes]
rs28615165	0.98[AFR][1000 genomes]
rs28835623	0.95[AFR][1000 genomes]
rs4428287	0.92[ASN][1000 genomes]
rs59485348	0.92[ASN][1000 genomes]
rs62307686	0.92[ASN][1000 genomes]
rs6830350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6831146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6834999	0.89[AFR][1000 genomes]
rs6835957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6840437	0.92[ASN][1000 genomes]
rs6853319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6853796	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7655125	1.00[JPT][hapmap]
rs7658024	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7659308	0.92[ASN][1000 genomes]
rs7667871	0.92[ASN][1000 genomes]
rs7676752	0.92[ASN][1000 genomes]
rs7677279	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7677774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7678087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7678230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7680583	0.94[AFR][1000 genomes]
rs9992642	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101847600-101848600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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