Variant report

Variant	rs28379569
Chromosome Location	chr4:101849296-101849297
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10001284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10001589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10001626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10007981	0.98[AFR][1000 genomes]
rs10018629	0.91[AMR][1000 genomes]
rs10020201	0.98[AFR][1000 genomes]
rs10023612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025741	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025843	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10026726	1.00[AMR][1000 genomes]
rs10028145	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10049583	1.00[AMR][1000 genomes]
rs10049984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12331027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17030619	0.98[AFR][1000 genomes]
rs17030636	0.98[AFR][1000 genomes]
rs28420475	1.00[AMR][1000 genomes]
rs28473421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28521231	0.91[AMR][1000 genomes]
rs28529062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570164	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28615165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28684944	0.91[AMR][1000 genomes]
rs28689693	1.00[AMR][1000 genomes]
rs28835623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6532906	1.00[AMR][1000 genomes]
rs6532907	1.00[AMR][1000 genomes]
rs6532908	1.00[AMR][1000 genomes]
rs6830350	0.98[AFR][1000 genomes]
rs6831146	0.98[AFR][1000 genomes]
rs6834999	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6835230	0.98[AFR][1000 genomes]
rs6835957	0.98[AFR][1000 genomes]
rs6841123	0.91[AMR][1000 genomes]
rs6853319	0.98[AFR][1000 genomes]
rs6853796	0.96[AFR][1000 genomes]
rs7658273	1.00[AMR][1000 genomes]
rs7677279	0.97[AFR][1000 genomes]
rs7677774	0.98[AFR][1000 genomes]
rs7678087	0.98[AFR][1000 genomes]
rs7678230	0.98[AFR][1000 genomes]
rs7678310	1.00[AMR][1000 genomes]
rs7680583	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7693184	1.00[AMR][1000 genomes]
rs9990455	1.00[AMR][1000 genomes]
rs9992642	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9995988	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101848600-101849400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:101848600-101851000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:101848800-101850800	Enhancers	Adipose Nuclei	Adipose

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