Variant report

Variant	rs28689693
Chromosome Location	chr4:101799451-101799452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10001284	1.00[AMR][1000 genomes]
rs10001589	1.00[AMR][1000 genomes]
rs10001626	1.00[AMR][1000 genomes]
rs10018629	0.91[AMR][1000 genomes]
rs10023612	1.00[AMR][1000 genomes]
rs10024061	1.00[AMR][1000 genomes]
rs10025741	1.00[AMR][1000 genomes]
rs10025843	1.00[AMR][1000 genomes]
rs10026726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028145	1.00[AMR][1000 genomes]
rs10049583	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10049984	1.00[AMR][1000 genomes]
rs12331027	1.00[AMR][1000 genomes]
rs28379569	1.00[AMR][1000 genomes]
rs28420475	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28473421	1.00[AMR][1000 genomes]
rs28521231	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28529062	1.00[AMR][1000 genomes]
rs28570164	1.00[AMR][1000 genomes]
rs28615165	1.00[AMR][1000 genomes]
rs28684944	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28835623	1.00[AMR][1000 genomes]
rs6532906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6532907	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6532908	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6834999	1.00[AMR][1000 genomes]
rs6841123	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7658273	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7678310	1.00[AMR][1000 genomes]
rs7680583	1.00[AMR][1000 genomes]
rs7693184	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9990455	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9992642	1.00[AMR][1000 genomes]
rs9995988	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101798000-101800600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:101798400-101800600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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