Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10001284	1.00[AMR][1000 genomes]
rs10001589	1.00[AMR][1000 genomes]
rs10001626	1.00[AMR][1000 genomes]
rs10018629	0.91[AMR][1000 genomes]
rs10023612	1.00[AMR][1000 genomes]
rs10024061	1.00[AMR][1000 genomes]
rs10025741	1.00[AMR][1000 genomes]
rs10025843	1.00[AMR][1000 genomes]
rs10026726	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028145	1.00[AMR][1000 genomes]
rs10049984	1.00[AMR][1000 genomes]
rs12331027	1.00[AMR][1000 genomes]
rs28379569	1.00[AMR][1000 genomes]
rs28420475	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28473421	1.00[AMR][1000 genomes]
rs28521231	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28529062	1.00[AMR][1000 genomes]
rs28570164	1.00[AMR][1000 genomes]
rs28615165	1.00[AMR][1000 genomes]
rs28684944	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28689693	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28835623	1.00[AMR][1000 genomes]
rs6532906	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6532907	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6532908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6532909	1.00[YRI][hapmap]
rs6834999	1.00[AMR][1000 genomes]
rs6841123	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7658273	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7678310	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7680583	1.00[AMR][1000 genomes]
rs7693184	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9990455	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9992642	1.00[AMR][1000 genomes]
rs9995988	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101809600-101810600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr4:101809600-101810800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:101810400-101811000	Enhancers	GM12878-XiMat	blood

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