Variant report
| Variant | rs6532907 |
|---|---|
| Chromosome Location | chr4:101788573-101788574 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:101776053..101778454-chr4:101787819..101790295,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10001284 | 1.00[AMR][1000 genomes] |
| rs10001589 | 1.00[AMR][1000 genomes] |
| rs10001626 | 1.00[AMR][1000 genomes] |
| rs10018629 | 0.91[AMR][1000 genomes] |
| rs10023612 | 1.00[AMR][1000 genomes] |
| rs10024061 | 1.00[AMR][1000 genomes] |
| rs10025741 | 1.00[AMR][1000 genomes] |
| rs10025843 | 1.00[AMR][1000 genomes] |
| rs10026726 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10028145 | 1.00[AMR][1000 genomes] |
| rs10049583 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10049984 | 1.00[AMR][1000 genomes] |
| rs12331027 | 1.00[AMR][1000 genomes] |
| rs28379569 | 1.00[AMR][1000 genomes] |
| rs28420475 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28473421 | 1.00[AMR][1000 genomes] |
| rs28521231 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs28529062 | 1.00[AMR][1000 genomes] |
| rs28570164 | 1.00[AMR][1000 genomes] |
| rs28615165 | 1.00[AMR][1000 genomes] |
| rs28684944 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs28689693 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28835623 | 1.00[AMR][1000 genomes] |
| rs6532906 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6532908 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6834999 | 1.00[AMR][1000 genomes] |
| rs6841123 | 0.99[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs7658273 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7678310 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7680583 | 1.00[AMR][1000 genomes] |
| rs7693184 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9990455 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9992642 | 1.00[AMR][1000 genomes] |
| rs9995988 | 0.91[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931418 | chr4:101500167-102443207 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:101786600-101796800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
