Variant report

Variant	rs13138965
Chromosome Location	chr4:101791556-101791557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10007981	0.92[ASN][1000 genomes]
rs10012835	0.82[AFR][1000 genomes]
rs10020201	0.84[ASN][1000 genomes]
rs10031159	0.83[AFR][1000 genomes]
rs10032208	0.83[AFR][1000 genomes]
rs13102244	0.95[EUR][1000 genomes]
rs13102608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13104590	1.00[EUR][1000 genomes]
rs13104901	0.95[EUR][1000 genomes]
rs13107645	0.95[EUR][1000 genomes]
rs13109325	0.81[EUR][1000 genomes]
rs13109446	0.95[EUR][1000 genomes]
rs13109508	0.83[EUR][1000 genomes]
rs13110542	0.95[EUR][1000 genomes]
rs13110644	0.95[EUR][1000 genomes]
rs13111905	0.95[EUR][1000 genomes]
rs13116153	0.95[EUR][1000 genomes]
rs13117474	0.88[TSI][hapmap]
rs13120027	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13121245	0.95[EUR][1000 genomes]
rs13121438	0.95[EUR][1000 genomes]
rs13122599	0.95[EUR][1000 genomes]
rs13123162	0.95[EUR][1000 genomes]
rs13129721	0.95[EUR][1000 genomes]
rs13130074	0.95[EUR][1000 genomes]
rs13131485	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13132028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134885	0.81[AFR][1000 genomes]
rs13135380	0.81[AFR][1000 genomes]
rs13150288	0.95[EUR][1000 genomes]
rs1390931	0.95[EUR][1000 genomes]
rs1390932	0.95[EUR][1000 genomes]
rs1390936	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1566119	1.00[EUR][1000 genomes]
rs17030522	1.00[ASN][1000 genomes]
rs17030525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030528	1.00[ASN][1000 genomes]
rs17030531	1.00[ASN][1000 genomes]
rs17030534	1.00[ASN][1000 genomes]
rs17030541	1.00[ASN][1000 genomes]
rs17030548	1.00[ASN][1000 genomes]
rs17030550	1.00[ASN][1000 genomes]
rs17030551	1.00[ASN][1000 genomes]
rs17030553	1.00[ASN][1000 genomes]
rs17030554	1.00[ASN][1000 genomes]
rs17030557	1.00[ASN][1000 genomes]
rs17030560	1.00[ASN][1000 genomes]
rs17030619	0.92[ASN][1000 genomes]
rs17030636	0.92[ASN][1000 genomes]
rs17227226	0.95[EUR][1000 genomes]
rs17635286	0.90[TSI][hapmap]
rs17813352	0.95[EUR][1000 genomes]
rs17813556	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs17813598	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs17813670	0.95[EUR][1000 genomes]
rs17813694	0.95[EUR][1000 genomes]
rs28444682	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903222	0.95[EUR][1000 genomes]
rs34080291	0.95[EUR][1000 genomes]
rs34103148	1.00[EUR][1000 genomes]
rs34126461	0.95[EUR][1000 genomes]
rs34394941	0.97[EUR][1000 genomes]
rs34674329	1.00[EUR][1000 genomes]
rs34716852	0.95[EUR][1000 genomes]
rs34742412	0.89[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs34754564	0.95[EUR][1000 genomes]
rs34802397	0.95[EUR][1000 genomes]
rs34810105	0.95[EUR][1000 genomes]
rs34833700	0.95[EUR][1000 genomes]
rs34839174	0.95[EUR][1000 genomes]
rs34885747	0.97[EUR][1000 genomes]
rs34891917	0.95[EUR][1000 genomes]
rs34920876	0.95[EUR][1000 genomes]
rs35024886	0.95[EUR][1000 genomes]
rs35150863	0.95[EUR][1000 genomes]
rs35170503	0.95[EUR][1000 genomes]
rs35481231	0.95[EUR][1000 genomes]
rs35554164	0.95[EUR][1000 genomes]
rs35564595	0.95[EUR][1000 genomes]
rs35629108	0.95[EUR][1000 genomes]
rs35664627	0.95[EUR][1000 genomes]
rs35795105	0.92[EUR][1000 genomes]
rs35863364	0.95[EUR][1000 genomes]
rs35969070	1.00[EUR][1000 genomes]
rs36091097	0.95[EUR][1000 genomes]
rs4428287	1.00[ASN][1000 genomes]
rs59485348	1.00[ASN][1000 genomes]
rs62305818	0.94[EUR][1000 genomes]
rs62305826	0.95[EUR][1000 genomes]
rs62305828	0.95[EUR][1000 genomes]
rs62305832	0.95[EUR][1000 genomes]
rs62305833	0.95[EUR][1000 genomes]
rs62305834	0.95[EUR][1000 genomes]
rs62305843	0.95[EUR][1000 genomes]
rs62307671	0.95[EUR][1000 genomes]
rs62307673	0.94[EUR][1000 genomes]
rs62307674	0.95[EUR][1000 genomes]
rs62307677	0.95[EUR][1000 genomes]
rs62307678	0.95[EUR][1000 genomes]
rs62307679	0.95[EUR][1000 genomes]
rs62307680	0.95[EUR][1000 genomes]
rs62307682	0.94[EUR][1000 genomes]
rs62307685	0.97[EUR][1000 genomes]
rs62307686	1.00[ASN][1000 genomes]
rs62307719	1.00[EUR][1000 genomes]
rs62307725	1.00[EUR][1000 genomes]
rs6532903	0.90[EUR][1000 genomes]
rs6830350	0.92[ASN][1000 genomes]
rs6831146	0.92[ASN][1000 genomes]
rs6835230	0.92[ASN][1000 genomes]
rs6835722	1.00[EUR][1000 genomes]
rs6835957	0.92[ASN][1000 genomes]
rs6840437	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840973	0.97[EUR][1000 genomes]
rs6853319	0.92[ASN][1000 genomes]
rs6853796	0.92[ASN][1000 genomes]
rs71600272	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7434953	0.95[EUR][1000 genomes]
rs7437932	0.95[EUR][1000 genomes]
rs7441213	0.95[EUR][1000 genomes]
rs7441263	0.92[EUR][1000 genomes]
rs7441325	0.95[EUR][1000 genomes]
rs7655125	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7658024	1.00[ASN][1000 genomes]
rs7659308	1.00[ASN][1000 genomes]
rs7667871	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676752	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677279	0.92[ASN][1000 genomes]
rs7677774	0.92[ASN][1000 genomes]
rs7678087	0.92[ASN][1000 genomes]
rs7678230	0.92[ASN][1000 genomes]
rs7681227	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7686000	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7696663	1.00[EUR][1000 genomes]
rs931622	0.95[EUR][1000 genomes]
rs978155	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101786600-101796800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:101789800-101792400	Weak transcription	Pancreas	Pancrea
3	chr4:101789800-101794200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:101790000-101792000	Weak transcription	Esophagus	oesophagus
5	chr4:101791200-101792400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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