Variant report

Variant	rs34754564
Chromosome Location	chr4:101745069-101745070
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs13102244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13102608	0.95[EUR][1000 genomes]
rs13104590	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13104901	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13107645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13109077	0.80[EUR][1000 genomes]
rs13109325	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13109446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13109508	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13110542	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13110644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13111905	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13116153	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13120027	0.95[EUR][1000 genomes]
rs13121245	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13121438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13122599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13123162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13129721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13130074	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13131485	0.91[EUR][1000 genomes]
rs13132028	0.95[EUR][1000 genomes]
rs13137007	0.91[AFR][1000 genomes]
rs13138965	0.95[EUR][1000 genomes]
rs13144793	0.83[AMR][1000 genomes]
rs13150288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1390931	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1390932	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1390936	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1566119	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17030525	0.95[EUR][1000 genomes]
rs17227226	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813352	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813556	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813598	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813670	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813694	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2014244	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs28444682	0.95[EUR][1000 genomes]
rs2903222	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34080291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34103148	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34126461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34394941	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34674329	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34716852	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34742412	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34802397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34810105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34833700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34839174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34885747	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34891917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34906832	0.80[EUR][1000 genomes]
rs34920876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35024886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35150863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35170503	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35209788	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35481231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35485367	0.80[EUR][1000 genomes]
rs35554164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35564595	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35629108	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35664627	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35795105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35863364	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35969070	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36091097	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305804	0.80[EUR][1000 genomes]
rs62305818	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62305826	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305843	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307671	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307673	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62307674	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307675	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307676	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307677	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307678	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307679	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307680	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307682	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62307685	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62307719	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62307725	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6532903	0.91[EUR][1000 genomes]
rs6835722	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6840437	0.95[EUR][1000 genomes]
rs6840973	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71600272	0.95[EUR][1000 genomes]
rs7434953	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7437932	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7441213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7441263	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7441325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7655125	0.91[EUR][1000 genomes]
rs7667871	0.95[EUR][1000 genomes]
rs7676752	0.95[EUR][1000 genomes]
rs7681227	0.91[EUR][1000 genomes]
rs7686000	0.95[EUR][1000 genomes]
rs7696663	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs931622	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101740000-101745600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:101743200-101745200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr4:101743800-101745200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:101743800-101745400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:101743800-101745400	Enhancers	NHEK	skin
6	chr4:101744000-101746000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:101744200-101745200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:101744200-101745200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:101744200-101745200	Enhancers	HMEC	breast
10	chr4:101744400-101745200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:101744400-101747400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr4:101744600-101745200	Flanking Active TSS	A549	lung
13	chr4:101744600-101745200	Enhancers	Hela-S3	cervix
14	chr4:101744600-101745200	Enhancers	HSMMtube	muscle
15	chr4:101744600-101745400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr4:101744600-101745400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr4:101744600-101745400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:101744600-101745400	Enhancers	Stomach Mucosa	stomach
19	chr4:101744600-101745600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr4:101744600-101745600	Enhancers	HepG2	liver
21	chr4:101744800-101745400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:101744800-101745600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:101744800-101750200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:101745000-101745400	Enhancers	Fetal Brain Female	brain
25	chr4:101745000-101745600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:101745000-101747000	Enhancers	GM12878-XiMat	blood
27	chr4:101745000-101750000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:101745000-101750200	Weak transcription	NH-A	brain

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