Variant report

Variant	rs62305843
Chromosome Location	chr4:101752956-101752957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101747895..101750481-chr4:101750941..101753813,2	MCF-7	breast:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs13102244	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13102608	0.95[EUR][1000 genomes]
rs13104590	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13104901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13107645	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13109077	0.80[EUR][1000 genomes]
rs13109325	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13109446	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13109508	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13110542	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13110644	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13111905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13116153	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13117474	0.83[AFR][1000 genomes]
rs13120027	0.95[EUR][1000 genomes]
rs13121245	1.00[EUR][1000 genomes]
rs13121438	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13122599	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13123162	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13129721	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13130074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13131485	0.91[EUR][1000 genomes]
rs13132028	0.95[EUR][1000 genomes]
rs13138965	0.95[EUR][1000 genomes]
rs13144793	0.83[AMR][1000 genomes]
rs13149562	0.83[AFR][1000 genomes]
rs13150288	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1390931	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1390932	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1390936	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1566119	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17030525	0.95[EUR][1000 genomes]
rs17227226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813352	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813598	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2014244	0.80[EUR][1000 genomes]
rs2202773	0.83[AFR][1000 genomes]
rs28444682	0.95[EUR][1000 genomes]
rs2903222	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34080291	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34103148	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34126461	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34394941	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34674329	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34716852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34742412	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34754564	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34802397	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34810105	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34833700	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34839174	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34885747	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34891917	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34906832	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34920876	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35024886	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35150863	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35170503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35209788	0.80[EUR][1000 genomes]
rs35481231	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35485367	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35554164	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35564595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35629108	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35664627	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35795105	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35863364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35969070	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36091097	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305804	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62305805	0.83[AFR][1000 genomes]
rs62305818	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62305826	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305828	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305832	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305833	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305834	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62307674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307675	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307676	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307677	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307682	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62307685	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62307719	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62307725	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6532903	0.91[EUR][1000 genomes]
rs6835722	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6840437	0.95[EUR][1000 genomes]
rs6840973	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71600272	0.95[EUR][1000 genomes]
rs7434953	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7437932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7441213	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7441263	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7441325	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7655125	0.91[EUR][1000 genomes]
rs7667871	0.95[EUR][1000 genomes]
rs7676752	0.95[EUR][1000 genomes]
rs7681227	0.91[EUR][1000 genomes]
rs7686000	0.95[EUR][1000 genomes]
rs7696663	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs931622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101745400-101758800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:101750400-101753600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:101752400-101753000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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