Variant report

Variant	rs6532903
Chromosome Location	chr4:101754754-101754755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10008442	0.94[ASN][1000 genomes]
rs10013582	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10013744	1.00[ASN][1000 genomes]
rs10516476	1.00[ASN][1000 genomes]
rs13102244	0.91[EUR][1000 genomes]
rs13102501	0.94[ASN][1000 genomes]
rs13102608	0.90[EUR][1000 genomes]
rs13104590	0.90[EUR][1000 genomes]
rs13104901	0.91[EUR][1000 genomes]
rs13107645	0.91[EUR][1000 genomes]
rs13109446	0.91[EUR][1000 genomes]
rs13110542	0.91[EUR][1000 genomes]
rs13110644	0.91[EUR][1000 genomes]
rs13111905	0.91[EUR][1000 genomes]
rs13116153	0.91[EUR][1000 genomes]
rs13117474	0.89[CEU][hapmap]
rs13118441	0.94[ASN][1000 genomes]
rs13120027	0.90[EUR][1000 genomes]
rs13121245	0.91[EUR][1000 genomes]
rs13121438	0.91[EUR][1000 genomes]
rs13122395	1.00[ASN][1000 genomes]
rs13122599	0.91[EUR][1000 genomes]
rs13123162	0.91[EUR][1000 genomes]
rs13129721	0.91[EUR][1000 genomes]
rs13130074	0.91[EUR][1000 genomes]
rs13130138	0.94[ASN][1000 genomes]
rs13131485	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132028	0.90[EUR][1000 genomes]
rs13138965	0.90[EUR][1000 genomes]
rs13150288	0.91[EUR][1000 genomes]
rs1390930	1.00[ASN][1000 genomes]
rs1390931	0.91[EUR][1000 genomes]
rs1390932	0.91[EUR][1000 genomes]
rs1390933	1.00[ASN][1000 genomes]
rs1390934	1.00[ASN][1000 genomes]
rs1390936	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs1566119	0.90[EUR][1000 genomes]
rs17030481	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17030500	1.00[ASN][1000 genomes]
rs17030502	1.00[ASN][1000 genomes]
rs17030525	0.90[EUR][1000 genomes]
rs17227226	0.91[EUR][1000 genomes]
rs17635262	0.88[CEU][hapmap]
rs17635286	0.88[CEU][hapmap]
rs17813352	0.91[EUR][1000 genomes]
rs17813556	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17813598	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17813670	0.91[EUR][1000 genomes]
rs17813694	0.91[EUR][1000 genomes]
rs28444682	0.90[EUR][1000 genomes]
rs28701141	1.00[ASN][1000 genomes]
rs2903222	0.91[EUR][1000 genomes]
rs34080291	0.91[EUR][1000 genomes]
rs34103148	0.90[EUR][1000 genomes]
rs34126461	0.91[EUR][1000 genomes]
rs34394941	0.90[EUR][1000 genomes]
rs34674329	0.90[EUR][1000 genomes]
rs34716852	0.91[EUR][1000 genomes]
rs34742412	1.00[CEU][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs34754564	0.91[EUR][1000 genomes]
rs34802397	0.91[EUR][1000 genomes]
rs34810105	0.91[EUR][1000 genomes]
rs34833700	0.91[EUR][1000 genomes]
rs34839174	0.91[EUR][1000 genomes]
rs34885747	0.90[EUR][1000 genomes]
rs34891917	0.91[EUR][1000 genomes]
rs34920876	0.91[EUR][1000 genomes]
rs35024886	0.91[EUR][1000 genomes]
rs35150863	0.91[EUR][1000 genomes]
rs35170503	0.91[EUR][1000 genomes]
rs35481231	0.91[EUR][1000 genomes]
rs35540482	1.00[ASN][1000 genomes]
rs35554164	0.91[EUR][1000 genomes]
rs35564595	0.91[EUR][1000 genomes]
rs35629108	0.91[EUR][1000 genomes]
rs35664627	0.91[EUR][1000 genomes]
rs35795105	0.88[EUR][1000 genomes]
rs35807447	1.00[ASN][1000 genomes]
rs35863364	0.91[EUR][1000 genomes]
rs35969070	0.90[EUR][1000 genomes]
rs36091097	0.91[EUR][1000 genomes]
rs58690640	1.00[ASN][1000 genomes]
rs58926631	1.00[ASN][1000 genomes]
rs62305818	0.90[EUR][1000 genomes]
rs62305826	0.91[EUR][1000 genomes]
rs62305828	0.91[EUR][1000 genomes]
rs62305832	0.91[EUR][1000 genomes]
rs62305833	0.91[EUR][1000 genomes]
rs62305834	0.91[EUR][1000 genomes]
rs62305843	0.91[EUR][1000 genomes]
rs62307671	0.91[EUR][1000 genomes]
rs62307673	0.90[EUR][1000 genomes]
rs62307674	0.91[EUR][1000 genomes]
rs62307677	0.91[EUR][1000 genomes]
rs62307678	0.91[EUR][1000 genomes]
rs62307679	0.91[EUR][1000 genomes]
rs62307680	0.91[EUR][1000 genomes]
rs62307682	0.90[EUR][1000 genomes]
rs62307685	0.90[EUR][1000 genomes]
rs62307719	0.90[EUR][1000 genomes]
rs62307725	0.90[EUR][1000 genomes]
rs6419156	1.00[ASN][1000 genomes]
rs6831914	1.00[ASN][1000 genomes]
rs6835722	0.90[EUR][1000 genomes]
rs6840437	0.90[EUR][1000 genomes]
rs6840973	0.87[EUR][1000 genomes]
rs71600272	0.90[EUR][1000 genomes]
rs7434953	0.91[EUR][1000 genomes]
rs7437932	0.91[EUR][1000 genomes]
rs7441213	0.91[EUR][1000 genomes]
rs7441263	0.88[EUR][1000 genomes]
rs7441325	0.91[EUR][1000 genomes]
rs7655125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7667871	0.90[EUR][1000 genomes]
rs7676752	0.90[EUR][1000 genomes]
rs7681227	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686000	0.90[EUR][1000 genomes]
rs7689536	1.00[ASN][1000 genomes]
rs7696663	0.90[EUR][1000 genomes]
rs931622	0.91[EUR][1000 genomes]
rs9991123	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101745400-101758800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:101753000-101758000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:101754200-101755000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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