Variant report

Variant	rs13117474
Chromosome Location	chr4:101737723-101737724
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr4:101737424-101738509	SK-N-SH	brain:	n/a	n/a
2	GATA3	chr4:101737561-101738359	SK-N-SH	brain:	n/a	n/a
3	NFIC	chr4:101737525-101738326	SK-N-SH	brain:	n/a	n/a
4	TCF12	chr4:101737665-101738419	SK-N-SH	brain:	n/a	n/a
5	TCF12	chr4:101737548-101738314	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
EMCN-IT1	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs13104590	1.00[AFR][1000 genomes]
rs13109077	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13110542	1.00[AFR][1000 genomes]
rs13116153	1.00[AFR][1000 genomes]
rs13137007	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13144793	0.83[AFR][1000 genomes]
rs13149562	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1390931	1.00[AFR][1000 genomes]
rs1390932	1.00[AFR][1000 genomes]
rs1390936	1.00[AFR][1000 genomes]
rs17227226	0.83[AFR][1000 genomes]
rs17635262	0.83[AFR][1000 genomes]
rs17635286	0.83[AFR][1000 genomes]
rs17813352	1.00[AFR][1000 genomes]
rs17813556	0.89[CEU][hapmap];0.83[AFR][1000 genomes]
rs17813598	0.89[CEU][hapmap];1.00[AFR][1000 genomes]
rs17813670	0.83[AFR][1000 genomes]
rs17813694	0.83[AFR][1000 genomes]
rs1976560	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2014244	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2202773	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2903222	1.00[AFR][1000 genomes]
rs34040983	0.88[AMR][1000 genomes]
rs34394941	1.00[AFR][1000 genomes]
rs34674329	1.00[AFR][1000 genomes]
rs34716852	0.83[AFR][1000 genomes]
rs34742412	0.89[CEU][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes]
rs34885747	1.00[AFR][1000 genomes]
rs34906832	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35170503	0.83[AFR][1000 genomes]
rs35209788	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35485367	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35564595	0.83[AFR][1000 genomes]
rs35629108	1.00[AFR][1000 genomes]
rs35664627	1.00[AFR][1000 genomes]
rs35669111	0.83[AFR][1000 genomes]
rs35863364	0.83[AFR][1000 genomes]
rs35969070	1.00[AFR][1000 genomes]
rs36091097	1.00[AFR][1000 genomes]
rs62305804	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62305805	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62305818	1.00[AFR][1000 genomes]
rs62305826	1.00[AFR][1000 genomes]
rs62305843	0.83[AFR][1000 genomes]
rs62307671	0.83[AFR][1000 genomes]
rs62307673	0.83[AFR][1000 genomes]
rs62307674	0.83[AFR][1000 genomes]
rs62307677	1.00[AFR][1000 genomes]
rs62307678	0.83[AFR][1000 genomes]
rs62307679	0.83[AFR][1000 genomes]
rs62307680	0.83[AFR][1000 genomes]
rs62307682	1.00[AFR][1000 genomes]
rs62307685	1.00[AFR][1000 genomes]
rs62307719	1.00[AFR][1000 genomes]
rs62307725	1.00[AFR][1000 genomes]
rs62307731	0.83[AFR][1000 genomes]
rs6835722	1.00[AFR][1000 genomes]
rs6840973	1.00[AFR][1000 genomes]
rs7434953	1.00[AFR][1000 genomes]
rs7437932	0.83[AFR][1000 genomes]
rs7655125	0.89[CEU][hapmap]
rs931622	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101736600-101741000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:101737400-101738000	Enhancers	Fetal Lung	lung
3	chr4:101737400-101738000	Enhancers	Hela-S3	cervix
4	chr4:101737600-101738000	Enhancers	Fetal Brain Male	brain

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