Variant report

Variant	rs1976560
Chromosome Location	chr4:101722330-101722331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs13104590	0.83[AFR][1000 genomes]
rs13109077	0.89[AMR][1000 genomes]
rs13110542	0.83[AFR][1000 genomes]
rs13116153	0.83[AFR][1000 genomes]
rs13117474	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs13144793	1.00[AFR][1000 genomes]
rs13149562	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1390931	0.83[AFR][1000 genomes]
rs1390932	0.83[AFR][1000 genomes]
rs1390936	0.83[AFR][1000 genomes]
rs17635262	1.00[AFR][1000 genomes]
rs17635286	1.00[ASW][hapmap];0.83[GIH][hapmap];0.90[TSI][hapmap];1.00[AFR][1000 genomes]
rs17813352	0.83[AFR][1000 genomes]
rs17813598	0.83[AFR][1000 genomes]
rs2014244	0.86[AMR][1000 genomes]
rs2202773	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2903222	0.83[AFR][1000 genomes]
rs34040983	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34394941	0.83[AFR][1000 genomes]
rs34674329	0.83[AFR][1000 genomes]
rs34742412	0.83[AFR][1000 genomes]
rs34885747	0.83[AFR][1000 genomes]
rs34906832	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35209788	0.86[AMR][1000 genomes]
rs35485367	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35629108	0.83[AFR][1000 genomes]
rs35664627	0.83[AFR][1000 genomes]
rs35969070	0.83[AFR][1000 genomes]
rs36091097	0.83[AFR][1000 genomes]
rs62305804	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs62305805	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs62305818	0.83[AFR][1000 genomes]
rs62305826	0.83[AFR][1000 genomes]
rs62307677	0.83[AFR][1000 genomes]
rs62307682	0.83[AFR][1000 genomes]
rs62307685	0.83[AFR][1000 genomes]
rs62307719	0.83[AFR][1000 genomes]
rs62307725	0.83[AFR][1000 genomes]
rs6835722	0.83[AFR][1000 genomes]
rs6840973	0.83[AFR][1000 genomes]
rs7434953	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101712800-101724400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:101716000-101725400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:101716800-101723000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:101720200-101722400	Enhancers	Gastric	stomach

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