Variant report

Variant	rs35485367
Chromosome Location	chr4:101738134-101738135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr4:101737424-101738509	SK-N-SH	brain:	n/a	n/a
2	EP300	chr4:101737849-101738250	Hela-S3	cervix:	n/a	chr4:101738231-101738245
3	GATA3	chr4:101737795-101738376	MCF-7	breast:	n/a	n/a
4	GATA3	chr4:101737561-101738359	SK-N-SH	brain:	n/a	n/a
5	NFIC	chr4:101737525-101738326	SK-N-SH	brain:	n/a	n/a
6	TCF12	chr4:101737665-101738419	SK-N-SH	brain:	n/a	n/a
7	RAD21	chr4:101737826-101738221	Hela-S3	cervix:	n/a	n/a
8	PBX3	chr4:101737774-101738365	SK-N-SH	brain:	n/a	n/a
9	GATA3	chr4:101737785-101738230	MCF-7	breast:	n/a	n/a
10	TCF12	chr4:101737548-101738314	SK-N-SH	brain:	n/a	n/a
11	CEBPB	chr4:101737788-101738249	Hela-S3	cervix:	n/a	n/a
12	GATA2	chr4:101737806-101738171	SH-SY5Y	brain:	n/a	n/a
13	TEAD4	chr4:101737728-101738338	SK-N-SH	brain:	n/a	n/a
14	GATA3	chr4:101737796-101738283	MCF-7	breast:	n/a	n/a
15	MAZ	chr4:101737880-101738221	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
EMCN-IT1	TF binding region

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs13102244	0.80[EUR][1000 genomes]
rs13104590	1.00[AFR][1000 genomes]
rs13104901	0.80[EUR][1000 genomes]
rs13107645	0.80[EUR][1000 genomes]
rs13109077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13109446	0.80[EUR][1000 genomes]
rs13110542	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13110644	0.80[EUR][1000 genomes]
rs13111905	0.80[EUR][1000 genomes]
rs13116153	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13117474	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13121245	0.80[EUR][1000 genomes]
rs13121438	0.80[EUR][1000 genomes]
rs13122599	0.80[EUR][1000 genomes]
rs13123162	0.80[EUR][1000 genomes]
rs13129721	0.80[EUR][1000 genomes]
rs13130074	0.80[EUR][1000 genomes]
rs13137007	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13144793	0.83[AFR][1000 genomes]
rs13149562	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13150288	0.80[EUR][1000 genomes]
rs1390931	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1390932	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1390936	1.00[AFR][1000 genomes]
rs17227226	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17635262	0.83[AFR][1000 genomes]
rs17635286	0.83[AFR][1000 genomes]
rs17813352	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17813556	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17813598	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17813670	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17813694	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1976560	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2014244	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2202773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2903222	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34040983	0.83[AMR][1000 genomes]
rs34080291	0.80[EUR][1000 genomes]
rs34126461	0.80[EUR][1000 genomes]
rs34394941	1.00[AFR][1000 genomes]
rs34674329	1.00[AFR][1000 genomes]
rs34716852	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34742412	1.00[AFR][1000 genomes]
rs34754564	0.80[EUR][1000 genomes]
rs34802397	0.80[EUR][1000 genomes]
rs34810105	0.80[EUR][1000 genomes]
rs34833700	0.80[EUR][1000 genomes]
rs34839174	0.80[EUR][1000 genomes]
rs34885747	1.00[AFR][1000 genomes]
rs34891917	0.80[EUR][1000 genomes]
rs34906832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34920876	0.80[EUR][1000 genomes]
rs35024886	0.80[EUR][1000 genomes]
rs35150863	0.80[EUR][1000 genomes]
rs35170503	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35209788	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35481231	0.80[EUR][1000 genomes]
rs35554164	0.80[EUR][1000 genomes]
rs35564595	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35629108	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35664627	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35669111	0.83[AFR][1000 genomes]
rs35863364	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35969070	1.00[AFR][1000 genomes]
rs36091097	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62305804	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305805	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62305818	1.00[AFR][1000 genomes]
rs62305826	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62305828	0.80[EUR][1000 genomes]
rs62305832	0.80[EUR][1000 genomes]
rs62305833	0.80[EUR][1000 genomes]
rs62305834	0.80[EUR][1000 genomes]
rs62305843	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62307671	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62307673	0.83[AFR][1000 genomes]
rs62307674	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62307677	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62307678	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62307679	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62307680	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62307682	1.00[AFR][1000 genomes]
rs62307685	1.00[AFR][1000 genomes]
rs62307719	1.00[AFR][1000 genomes]
rs62307725	1.00[AFR][1000 genomes]
rs62307731	0.83[AFR][1000 genomes]
rs6835722	1.00[AFR][1000 genomes]
rs6840973	1.00[AFR][1000 genomes]
rs7434953	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7437932	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7441213	0.80[EUR][1000 genomes]
rs7441325	0.80[EUR][1000 genomes]
rs931622	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101736600-101741000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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