Variant report

Variant	rs34040983
Chromosome Location	chr4:101723743-101723744
allele	-/GGTG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13109077	0.83[AMR][1000 genomes]
rs13117474	0.88[AMR][1000 genomes]
rs13149562	0.88[AMR][1000 genomes]
rs1976560	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2014244	0.81[AMR][1000 genomes]
rs2202773	0.83[AMR][1000 genomes]
rs34906832	0.83[AMR][1000 genomes]
rs35209788	0.81[AMR][1000 genomes]
rs35485367	0.83[AMR][1000 genomes]
rs62305804	0.91[AMR][1000 genomes]
rs62305805	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101712800-101724400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:101716000-101725400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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