Variant report
| Variant | rs62307731 |
|---|---|
| Chromosome Location | chr4:101876857-101876858 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs13104590 | 0.83[AFR][1000 genomes] |
| rs13110542 | 0.83[AFR][1000 genomes] |
| rs13116153 | 0.83[AFR][1000 genomes] |
| rs13117474 | 0.83[AFR][1000 genomes] |
| rs13149562 | 0.83[AFR][1000 genomes] |
| rs1390931 | 0.83[AFR][1000 genomes] |
| rs1390932 | 0.83[AFR][1000 genomes] |
| rs1390936 | 0.83[AFR][1000 genomes] |
| rs17813352 | 0.83[AFR][1000 genomes] |
| rs17813598 | 0.83[AFR][1000 genomes] |
| rs17826594 | 0.83[AMR][1000 genomes] |
| rs2202773 | 0.83[AFR][1000 genomes] |
| rs2903222 | 0.83[AFR][1000 genomes] |
| rs34394941 | 0.83[AFR][1000 genomes] |
| rs34558189 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs34577864 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs34674329 | 0.83[AFR][1000 genomes] |
| rs34742412 | 0.83[AFR][1000 genomes] |
| rs34885747 | 0.83[AFR][1000 genomes] |
| rs34906832 | 0.83[AFR][1000 genomes] |
| rs35485367 | 0.83[AFR][1000 genomes] |
| rs35629108 | 0.83[AFR][1000 genomes] |
| rs35664627 | 0.83[AFR][1000 genomes] |
| rs35669111 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs35969070 | 0.83[AFR][1000 genomes] |
| rs36091097 | 0.83[AFR][1000 genomes] |
| rs62305804 | 0.83[AFR][1000 genomes] |
| rs62305805 | 0.83[AFR][1000 genomes] |
| rs62305818 | 0.83[AFR][1000 genomes] |
| rs62305826 | 0.83[AFR][1000 genomes] |
| rs62307677 | 0.83[AFR][1000 genomes] |
| rs62307682 | 0.83[AFR][1000 genomes] |
| rs62307685 | 0.83[AFR][1000 genomes] |
| rs62307719 | 0.83[AFR][1000 genomes] |
| rs62307725 | 0.83[AFR][1000 genomes] |
| rs6835722 | 0.83[AFR][1000 genomes] |
| rs6840973 | 0.83[AFR][1000 genomes] |
| rs7434953 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931418 | chr4:101500167-102443207 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:101876200-101877000 | Flanking Active TSS | Primary neutrophils fromperipheralblood | blood |
