Variant report

Variant	rs62307676
Chromosome Location	chr4:101759087-101759088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100871256..100872827-chr4:101757584..101760350,2	K562	blood:
2	chr4:101758157..101759657-chr4:101771514..101773402,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs13102244	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13104590	0.86[AMR][1000 genomes]
rs13104901	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13107645	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13109325	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13109446	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13109508	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13110542	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13110644	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13111905	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13116153	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13121245	0.84[EUR][1000 genomes]
rs13121438	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13122599	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13123162	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13129721	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13130074	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13150288	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1390931	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1390932	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1390936	0.86[AMR][1000 genomes]
rs1566119	0.86[AMR][1000 genomes]
rs17227226	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17813352	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17813556	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17813598	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17813670	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17813694	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2903222	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34080291	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34103148	0.80[AMR][1000 genomes]
rs34126461	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34394941	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34674329	0.86[AMR][1000 genomes]
rs34716852	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34742412	0.82[EUR][1000 genomes]
rs34754564	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34802397	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34810105	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34833700	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34839174	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34885747	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34891917	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34920876	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35024886	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35150863	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35170503	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35481231	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35554164	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35564595	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35629108	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35664627	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35795105	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35863364	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36091097	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62305818	0.82[EUR][1000 genomes]
rs62305826	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62305828	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62305832	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62305833	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62305834	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62305843	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307671	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307673	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62307674	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307677	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307678	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307679	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307680	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307682	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62307685	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62307719	0.86[AMR][1000 genomes]
rs6835722	0.86[AMR][1000 genomes]
rs6840973	0.86[AMR][1000 genomes]
rs7434953	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7437932	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7441213	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7441263	0.81[EUR][1000 genomes]
rs7441325	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7696663	0.80[AMR][1000 genomes]
rs931622	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101757800-101759800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:101758000-101760000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:101758200-101760200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:101758400-101759400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:101758400-101759600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:101758400-101760400	Weak transcription	Liver	Liver
7	chr4:101758600-101761200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:101758800-101759200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:101758800-101759200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:101759000-101759400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:101759000-101759400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:101759000-101760200	Enhancers	HUES48 Cell Line	embryonic stem cell

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