Variant report

Variant	rs10012835
Chromosome Location	chr4:101813155-101813156
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10010483	0.82[AFR][1000 genomes]
rs10010839	0.82[AFR][1000 genomes]
rs10013351	0.82[AFR][1000 genomes]
rs10031159	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10032208	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1032571	0.92[AFR][1000 genomes]
rs12710943	0.82[AFR][1000 genomes]
rs13101247	0.97[ASN][1000 genomes]
rs13102756	0.97[ASN][1000 genomes]
rs13117493	0.82[AFR][1000 genomes]
rs13118293	0.82[AFR][1000 genomes]
rs13120027	0.81[AFR][1000 genomes]
rs13121097	0.97[ASN][1000 genomes]
rs13124911	0.97[ASN][1000 genomes]
rs13133911	0.97[ASN][1000 genomes]
rs13134885	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13135380	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13137995	0.97[ASN][1000 genomes]
rs13138965	0.82[AFR][1000 genomes]
rs13140872	0.82[AFR][1000 genomes]
rs13142917	0.97[ASN][1000 genomes]
rs13148044	0.97[ASN][1000 genomes]
rs1497016	0.99[EUR][1000 genomes]
rs17030617	0.97[ASN][1000 genomes]
rs2132697	0.92[AFR][1000 genomes]
rs28444682	0.81[AFR][1000 genomes]
rs2866249	0.91[AFR][1000 genomes]
rs2866250	0.91[AFR][1000 genomes]
rs28707515	0.82[AFR][1000 genomes]
rs28791596	0.82[AFR][1000 genomes]
rs28814048	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28897071	0.97[ASN][1000 genomes]
rs34205475	0.97[ASN][1000 genomes]
rs34384213	0.97[ASN][1000 genomes]
rs34389434	0.82[AFR][1000 genomes]
rs34524820	0.97[ASN][1000 genomes]
rs34921100	0.97[ASN][1000 genomes]
rs35149900	0.97[ASN][1000 genomes]
rs35614617	0.97[ASN][1000 genomes]
rs35938895	0.97[ASN][1000 genomes]
rs36112244	0.97[ASN][1000 genomes]
rs4699218	0.91[AFR][1000 genomes]
rs6532915	0.82[AFR][1000 genomes]
rs6817249	0.82[AFR][1000 genomes]
rs6817484	0.82[AFR][1000 genomes]
rs6824227	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6840166	0.82[AFR][1000 genomes]
rs6846371	0.97[ASN][1000 genomes]
rs71614671	0.97[ASN][1000 genomes]
rs7676752	0.81[AFR][1000 genomes]
rs7694484	0.82[AFR][1000 genomes]
rs7694622	0.82[AFR][1000 genomes]
rs7695375	0.82[AFR][1000 genomes]
rs7696336	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs978155	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101810600-101816600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:101811000-101816600	Weak transcription	GM12878-XiMat	blood
3	chr4:101811600-101817200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:101812800-101814200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr4:101813000-101816600	Enhancers	Fetal Intestine Small	intestine

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