Variant report

Variant	rs13140872
Chromosome Location	chr4:101829077-101829078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10001585	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10010483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010652	1.00[ASN][1000 genomes]
rs10010839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012835	0.82[AFR][1000 genomes]
rs10013351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019942	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10031159	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10032208	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10049744	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1032571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12646623	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12710943	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13101247	0.97[EUR][1000 genomes]
rs13102756	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13117493	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13118293	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13121097	0.94[EUR][1000 genomes]
rs13124911	1.00[EUR][1000 genomes]
rs13131002	0.98[ASN][1000 genomes]
rs13132631	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13133911	0.98[EUR][1000 genomes]
rs13134885	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13135380	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13137995	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13142917	0.86[EUR][1000 genomes]
rs13148044	0.94[EUR][1000 genomes]
rs13434725	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13434734	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13435486	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1497016	0.98[ASN][1000 genomes]
rs1587240	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17030617	0.94[EUR][1000 genomes]
rs17030633	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2132697	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2220988	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2866249	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2866250	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28707515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28791596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28814048	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28849460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28897071	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34205475	0.98[EUR][1000 genomes]
rs34381813	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34384213	0.94[EUR][1000 genomes]
rs34389434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34524820	0.97[EUR][1000 genomes]
rs34571175	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34921100	0.98[EUR][1000 genomes]
rs34971704	0.81[EUR][1000 genomes]
rs35149900	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35360493	0.82[EUR][1000 genomes]
rs35614617	0.98[EUR][1000 genomes]
rs35632784	0.82[EUR][1000 genomes]
rs35938895	0.98[EUR][1000 genomes]
rs36038282	0.82[EUR][1000 genomes]
rs36112244	0.86[EUR][1000 genomes]
rs4698838	0.81[EUR][1000 genomes]
rs4699140	0.98[ASN][1000 genomes]
rs4699162	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699218	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62307728	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532916	0.82[AMR][1000 genomes]
rs67935705	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824227	1.00[ASN][1000 genomes]
rs6840166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840505	1.00[ASN][1000 genomes]
rs6840909	0.98[ASN][1000 genomes]
rs6846371	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71614671	0.96[EUR][1000 genomes]
rs7665292	0.96[ASN][1000 genomes]
rs7694484	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694622	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7695271	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695375	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696336	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs978155	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101828800-101829200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:101828800-101829200	Enhancers	Pancreas	Pancrea
3	chr4:101828800-101829400	Enhancers	Adipose Nuclei	Adipose
4	chr4:101828800-101829400	Enhancers	Fetal Intestine Small	intestine
5	chr4:101828800-101829600	Enhancers	HepG2	liver
6	chr4:101829000-101829200	Enhancers	Liver	Liver
7	chr4:101829000-101829200	Enhancers	Stomach Mucosa	stomach
8	chr4:101829000-101829400	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links