Variant report

Variant	rs10049744
Chromosome Location	chr4:101834710-101834711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10001585	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10008170	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10010483	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10010652	0.98[ASN][1000 genomes]
rs10010839	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10013351	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10019942	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027689	0.83[AMR][1000 genomes]
rs10031159	0.98[ASN][1000 genomes]
rs10032208	0.94[ASN][1000 genomes]
rs1032571	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12646623	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12710943	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13101247	0.99[EUR][1000 genomes]
rs13102756	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs13117083	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs13117493	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13117589	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs13118293	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13121097	0.96[EUR][1000 genomes]
rs13124911	0.98[EUR][1000 genomes]
rs13131002	0.96[ASN][1000 genomes]
rs13132631	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13133911	0.96[EUR][1000 genomes]
rs13134885	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13135380	0.96[ASN][1000 genomes]
rs13136799	0.82[EUR][1000 genomes]
rs13137995	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13140872	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13142917	0.88[EUR][1000 genomes]
rs13148044	0.96[EUR][1000 genomes]
rs13434725	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13434734	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435486	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497016	0.96[ASN][1000 genomes]
rs1566120	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1587240	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17030617	0.96[EUR][1000 genomes]
rs17030633	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132697	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2220988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866249	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2866250	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28707515	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28791596	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28814048	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28849460	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28897071	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34205475	1.00[EUR][1000 genomes]
rs34381813	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34384213	0.96[EUR][1000 genomes]
rs34389434	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34524820	0.99[EUR][1000 genomes]
rs34571175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34921100	0.96[EUR][1000 genomes]
rs34971704	0.83[EUR][1000 genomes]
rs35067434	0.82[EUR][1000 genomes]
rs35106839	0.82[EUR][1000 genomes]
rs35149900	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35360493	0.84[EUR][1000 genomes]
rs35614617	0.96[EUR][1000 genomes]
rs35632784	0.84[EUR][1000 genomes]
rs35938895	1.00[EUR][1000 genomes]
rs36038282	0.84[EUR][1000 genomes]
rs36112244	0.88[EUR][1000 genomes]
rs36115383	0.82[EUR][1000 genomes]
rs4698838	0.83[EUR][1000 genomes]
rs4699140	0.96[ASN][1000 genomes]
rs4699162	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4699218	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62307728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532915	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532916	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67935705	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6817249	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6817484	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6824227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6840166	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6840505	0.98[ASN][1000 genomes]
rs6840909	0.96[ASN][1000 genomes]
rs6846371	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71614671	0.98[EUR][1000 genomes]
rs7665292	0.94[ASN][1000 genomes]
rs7687283	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7694484	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7694622	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7695271	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7695375	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7696336	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs978155	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101829200-101837400	Weak transcription	Pancreas	Pancrea
2	chr4:101834200-101835000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:101834200-101835400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:101834200-101835600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:101834200-101835600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:101834200-101835800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:101834400-101835600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:101834400-101836000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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