Variant report

Variant	rs10008170
Chromosome Location	chr4:101874890-101874891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10001585	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10019942	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10027689	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10049744	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12710943	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13101247	0.81[EUR][1000 genomes]
rs13117493	0.83[AMR][1000 genomes]
rs13118293	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13121097	0.84[EUR][1000 genomes]
rs13136799	0.98[EUR][1000 genomes]
rs13142917	0.91[EUR][1000 genomes]
rs13148044	0.84[EUR][1000 genomes]
rs13434725	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13434734	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13435486	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1587240	0.82[EUR][1000 genomes]
rs17030617	0.84[EUR][1000 genomes]
rs17030633	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2201677	0.86[EUR][1000 genomes]
rs2220988	0.82[EUR][1000 genomes]
rs34205475	0.82[EUR][1000 genomes]
rs34384213	0.84[EUR][1000 genomes]
rs34524820	0.81[EUR][1000 genomes]
rs34571175	0.82[EUR][1000 genomes]
rs34971704	0.96[EUR][1000 genomes]
rs35067434	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35106839	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35360493	0.98[EUR][1000 genomes]
rs35632784	0.98[EUR][1000 genomes]
rs35938895	0.82[EUR][1000 genomes]
rs36038282	0.98[EUR][1000 genomes]
rs36112244	0.91[EUR][1000 genomes]
rs36115383	0.93[EUR][1000 genomes]
rs4698838	0.96[EUR][1000 genomes]
rs62307728	0.82[EUR][1000 genomes]
rs6532916	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7687283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7694484	0.83[AMR][1000 genomes]
rs7694622	0.83[AMR][1000 genomes]
rs7695271	0.83[AMR][1000 genomes]
rs7695375	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101872800-101876200	Enhancers	Fetal Brain Male	brain

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