Variant report

Variant	rs10019942
Chromosome Location	chr4:101853794-101853795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10001585	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10008170	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10010483	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10010652	0.98[ASN][1000 genomes]
rs10010839	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10013351	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10027689	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10031159	0.98[ASN][1000 genomes]
rs10032208	0.94[ASN][1000 genomes]
rs10049744	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032571	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12646623	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12710943	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13101247	0.89[EUR][1000 genomes]
rs13102756	0.86[EUR][1000 genomes]
rs13117083	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs13117493	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13117589	0.84[CHB][hapmap]
rs13118293	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13121097	0.92[EUR][1000 genomes]
rs13124911	0.86[EUR][1000 genomes]
rs13131002	0.96[ASN][1000 genomes]
rs13132631	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13133911	0.86[EUR][1000 genomes]
rs13134885	0.98[ASN][1000 genomes]
rs13135380	0.96[ASN][1000 genomes]
rs13136799	0.91[EUR][1000 genomes]
rs13137995	0.86[EUR][1000 genomes]
rs13140872	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13142917	1.00[EUR][1000 genomes]
rs13148044	0.92[EUR][1000 genomes]
rs13434725	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13434734	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435486	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497016	0.96[ASN][1000 genomes]
rs1566120	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1587240	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17030617	0.92[EUR][1000 genomes]
rs17030633	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132697	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2201677	0.84[EUR][1000 genomes]
rs2220988	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866249	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2866250	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28707515	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28791596	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28814048	0.86[EUR][1000 genomes]
rs28849460	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28897071	0.86[EUR][1000 genomes]
rs34205475	0.88[EUR][1000 genomes]
rs34381813	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34384213	0.92[EUR][1000 genomes]
rs34389434	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34524820	0.89[EUR][1000 genomes]
rs34571175	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34921100	0.84[EUR][1000 genomes]
rs34971704	0.94[EUR][1000 genomes]
rs35067434	0.91[EUR][1000 genomes]
rs35106839	0.91[EUR][1000 genomes]
rs35149900	0.86[EUR][1000 genomes]
rs35360493	0.93[EUR][1000 genomes]
rs35614617	0.86[EUR][1000 genomes]
rs35632784	0.93[EUR][1000 genomes]
rs35938895	0.88[EUR][1000 genomes]
rs36038282	0.93[EUR][1000 genomes]
rs36112244	1.00[EUR][1000 genomes]
rs36115383	0.93[EUR][1000 genomes]
rs4698838	0.94[EUR][1000 genomes]
rs4699140	0.96[ASN][1000 genomes]
rs4699162	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4699218	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62307728	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532915	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532916	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67935705	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6817249	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6817484	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6824227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6840166	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6840505	0.98[ASN][1000 genomes]
rs6840909	0.96[ASN][1000 genomes]
rs6846371	0.86[EUR][1000 genomes]
rs71614671	0.88[EUR][1000 genomes]
rs7665292	0.94[ASN][1000 genomes]
rs7687283	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7694484	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7694622	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7695271	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7695375	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7696336	0.86[EUR][1000 genomes]
rs978155	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101853200-101853800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:101853200-101854400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:101853200-101854400	Enhancers	Colon Smooth Muscle	Colon
4	chr4:101853200-101854600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:101853400-101853800	Enhancers	Adipose Nuclei	Adipose
6	chr4:101853400-101853800	Enhancers	Brain Hippocampus Middle	brain
7	chr4:101853400-101853800	Enhancers	NHDF-Ad	bronchial
8	chr4:101853400-101854200	Enhancers	Right Atrium	heart
9	chr4:101853400-101854400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:101853400-101854400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:101853400-101854400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:101853400-101855000	Enhancers	Brain Angular Gyrus	brain
13	chr4:101853400-101855000	Enhancers	Brain Substantia Nigra	brain
14	chr4:101853400-101855800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:101853600-101854200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:101853600-101854400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:101853600-101855000	Enhancers	Brain Anterior Caudate	brain

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