Variant report

Variant	rs6840505
Chromosome Location	chr4:101830859-101830860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10001585	0.98[ASN][1000 genomes]
rs10010483	1.00[ASN][1000 genomes]
rs10010652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010839	1.00[ASN][1000 genomes]
rs10013351	1.00[ASN][1000 genomes]
rs10019942	0.98[ASN][1000 genomes]
rs10031159	1.00[ASN][1000 genomes]
rs10032208	0.96[ASN][1000 genomes]
rs10049744	0.98[ASN][1000 genomes]
rs1032571	1.00[ASN][1000 genomes]
rs1032572	0.84[AFR][1000 genomes]
rs12646623	1.00[ASN][1000 genomes]
rs12710943	0.94[ASN][1000 genomes]
rs13117493	1.00[ASN][1000 genomes]
rs13118293	1.00[ASN][1000 genomes]
rs13129195	0.83[AMR][1000 genomes]
rs13131002	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13132631	0.98[ASN][1000 genomes]
rs13134885	1.00[ASN][1000 genomes]
rs13135380	0.98[ASN][1000 genomes]
rs13140872	1.00[ASN][1000 genomes]
rs13434725	0.98[ASN][1000 genomes]
rs13434734	0.98[ASN][1000 genomes]
rs13435486	0.98[ASN][1000 genomes]
rs1497016	0.98[ASN][1000 genomes]
rs1587240	0.90[ASN][1000 genomes]
rs17030633	0.98[ASN][1000 genomes]
rs2132697	0.98[ASN][1000 genomes]
rs2220988	0.98[ASN][1000 genomes]
rs2866249	0.98[ASN][1000 genomes]
rs2866250	0.98[ASN][1000 genomes]
rs28707515	1.00[ASN][1000 genomes]
rs28791596	1.00[ASN][1000 genomes]
rs28849460	1.00[ASN][1000 genomes]
rs34381813	1.00[ASN][1000 genomes]
rs34389434	1.00[ASN][1000 genomes]
rs34571175	0.98[ASN][1000 genomes]
rs4699140	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699162	0.98[ASN][1000 genomes]
rs4699218	0.98[ASN][1000 genomes]
rs62307728	0.98[ASN][1000 genomes]
rs6532915	1.00[ASN][1000 genomes]
rs67935705	1.00[ASN][1000 genomes]
rs6817249	1.00[ASN][1000 genomes]
rs6817484	1.00[ASN][1000 genomes]
rs6824227	1.00[ASN][1000 genomes]
rs6840166	1.00[ASN][1000 genomes]
rs6840909	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7665292	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7694484	1.00[ASN][1000 genomes]
rs7694622	0.98[ASN][1000 genomes]
rs7695271	1.00[ASN][1000 genomes]
rs7695375	1.00[ASN][1000 genomes]
rs978155	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101829200-101837400	Weak transcription	Pancreas	Pancrea

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