Variant report

Variant	rs13134885
Chromosome Location	chr4:101815384-101815385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10001585	0.98[ASN][1000 genomes]
rs10010483	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10010652	1.00[ASN][1000 genomes]
rs10010839	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10012835	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10013351	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10019942	0.98[ASN][1000 genomes]
rs10031159	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032208	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10049744	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1032571	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12646623	0.92[CHB][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs12710943	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13117083	0.91[CEU][hapmap];0.81[CHB][hapmap]
rs13117493	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13118293	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13120027	0.81[AFR][1000 genomes]
rs13131002	0.98[ASN][1000 genomes]
rs13132631	0.98[ASN][1000 genomes]
rs13135380	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13138965	0.81[AFR][1000 genomes]
rs13140872	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13434725	0.98[ASN][1000 genomes]
rs13434734	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13435486	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1497016	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1566120	0.92[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap]
rs1587240	0.90[ASN][1000 genomes]
rs17030633	0.98[ASN][1000 genomes]
rs2132697	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2220988	0.98[ASN][1000 genomes]
rs28444682	0.81[AFR][1000 genomes]
rs2866249	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2866250	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28707515	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28791596	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28814048	0.82[AFR][1000 genomes]
rs28849460	1.00[ASN][1000 genomes]
rs34381813	1.00[ASN][1000 genomes]
rs34389434	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34571175	0.98[ASN][1000 genomes]
rs4699140	0.98[ASN][1000 genomes]
rs4699162	0.98[ASN][1000 genomes]
rs4699218	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs62307728	0.98[ASN][1000 genomes]
rs6532915	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67935705	1.00[ASN][1000 genomes]
rs6817249	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6817484	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6824227	0.92[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840166	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6840505	1.00[ASN][1000 genomes]
rs6840909	0.98[ASN][1000 genomes]
rs7665292	0.96[ASN][1000 genomes]
rs7676752	0.81[AFR][1000 genomes]
rs7694484	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7694622	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7695271	1.00[ASN][1000 genomes]
rs7695375	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7696336	0.86[AFR][1000 genomes]
rs978155	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101810600-101816600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:101811000-101816600	Weak transcription	GM12878-XiMat	blood
3	chr4:101811600-101817200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:101813000-101816600	Enhancers	Fetal Intestine Small	intestine
5	chr4:101813600-101816400	Weak transcription	Liver	Liver
6	chr4:101814000-101816600	Enhancers	Fetal Intestine Large	intestine
7	chr4:101814200-101816400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr4:101814800-101816600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr4:101815200-101816200	Enhancers	Duodenum Mucosa	Duodenum
10	chr4:101815200-101816600	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr4:101815200-101816600	Enhancers	Rectal Mucosa Donor 31	rectum

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