Variant report

Variant	rs12646623
Chromosome Location	chr4:101804019-101804020
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:101803862-101804234	GM12878	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051
2	SPI1	chr4:101803621-101804389	GM12878	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051
3	SPI1	chr4:101803831-101804177	GM12891	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051
4	SPI1	chr4:101803822-101804230	GM12891	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051
5	SPI1	chr4:101803931-101804122	GM12878	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051
6	SPI1	chr4:101803951-101804119	K562	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051
7	SPI1	chr4:101803819-101804303	HL-60	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051
8	SPI1	chr4:101803746-101804314	HL-60	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051

Variant related genes	Relation type
EMCN	TF binding region

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10001585	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10010483	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10010652	1.00[ASN][1000 genomes]
rs10010839	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10013351	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019942	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10031159	1.00[ASN][1000 genomes]
rs10032208	0.96[ASN][1000 genomes]
rs10049744	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1032571	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12710943	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13101247	0.96[EUR][1000 genomes]
rs13102756	0.99[EUR][1000 genomes]
rs13117083	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs13117493	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13117589	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs13118293	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13121097	0.92[EUR][1000 genomes]
rs13124911	0.99[EUR][1000 genomes]
rs13131002	0.98[ASN][1000 genomes]
rs13132631	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13133911	0.97[EUR][1000 genomes]
rs13134885	1.00[ASN][1000 genomes]
rs13135380	0.98[ASN][1000 genomes]
rs13136799	0.81[EUR][1000 genomes]
rs13137995	0.99[EUR][1000 genomes]
rs13140872	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142917	0.85[EUR][1000 genomes]
rs13148044	0.92[EUR][1000 genomes]
rs13434725	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13434734	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13435486	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1497016	0.98[ASN][1000 genomes]
rs1566120	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1587240	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17030617	0.92[EUR][1000 genomes]
rs17030633	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2132697	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2220988	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2866249	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2866250	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28707515	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28791596	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28814048	0.99[EUR][1000 genomes]
rs28849460	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28897071	0.99[EUR][1000 genomes]
rs34205475	0.97[EUR][1000 genomes]
rs34381813	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34384213	0.92[EUR][1000 genomes]
rs34389434	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34524820	0.96[EUR][1000 genomes]
rs34571175	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34921100	0.99[EUR][1000 genomes]
rs35067434	0.81[EUR][1000 genomes]
rs35106839	0.81[EUR][1000 genomes]
rs35149900	0.99[EUR][1000 genomes]
rs35360493	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35614617	0.97[EUR][1000 genomes]
rs35632784	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35938895	0.97[EUR][1000 genomes]
rs36038282	0.81[EUR][1000 genomes]
rs36112244	0.85[EUR][1000 genomes]
rs4699140	0.98[ASN][1000 genomes]
rs4699162	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699218	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62307728	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532915	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67935705	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817249	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817484	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824227	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6840166	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840505	1.00[ASN][1000 genomes]
rs6840909	0.98[ASN][1000 genomes]
rs6846371	0.99[EUR][1000 genomes]
rs71614671	0.95[EUR][1000 genomes]
rs7665292	0.96[ASN][1000 genomes]
rs7694484	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694622	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7695271	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695375	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696336	0.99[EUR][1000 genomes]
rs978155	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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