Variant report

Variant	rs6824227
Chromosome Location	chr4:101804257-101804258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr4:101803621-101804389	GM12878	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051
2	SPI1	chr4:101803819-101804303	HL-60	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051
3	SPI1	chr4:101803746-101804314	HL-60	blood:	n/a	chr4:101804040-101804053 chr4:101804039-101804052 chr4:101804042-101804051

Variant related genes	Relation type
EMCN	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10001585	0.98[ASN][1000 genomes]
rs10010483	1.00[ASN][1000 genomes]
rs10010652	1.00[ASN][1000 genomes]
rs10010839	1.00[ASN][1000 genomes]
rs10012835	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10013351	1.00[ASN][1000 genomes]
rs10019942	0.98[ASN][1000 genomes]
rs10031159	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032208	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10049744	0.98[ASN][1000 genomes]
rs1032571	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12646623	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12710943	0.94[ASN][1000 genomes]
rs13117083	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs13117493	1.00[ASN][1000 genomes]
rs13117589	0.84[CHB][hapmap]
rs13118293	1.00[ASN][1000 genomes]
rs13131002	0.98[ASN][1000 genomes]
rs13132631	0.98[ASN][1000 genomes]
rs13134885	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13135380	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13140872	1.00[ASN][1000 genomes]
rs13434725	0.98[ASN][1000 genomes]
rs13434734	0.98[ASN][1000 genomes]
rs13435486	0.98[ASN][1000 genomes]
rs1497016	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1566120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1587240	0.90[ASN][1000 genomes]
rs17030633	0.98[ASN][1000 genomes]
rs2132697	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2220988	0.98[ASN][1000 genomes]
rs2866249	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2866250	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28707515	1.00[ASN][1000 genomes]
rs28791596	1.00[ASN][1000 genomes]
rs28849460	1.00[ASN][1000 genomes]
rs34381813	1.00[ASN][1000 genomes]
rs34389434	1.00[ASN][1000 genomes]
rs34571175	0.98[ASN][1000 genomes]
rs4699140	0.98[ASN][1000 genomes]
rs4699162	0.98[ASN][1000 genomes]
rs4699218	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs62307728	0.98[ASN][1000 genomes]
rs6532915	1.00[ASN][1000 genomes]
rs67935705	1.00[ASN][1000 genomes]
rs6817249	1.00[ASN][1000 genomes]
rs6817484	1.00[ASN][1000 genomes]
rs6840166	1.00[ASN][1000 genomes]
rs6840505	1.00[ASN][1000 genomes]
rs6840909	0.98[ASN][1000 genomes]
rs7665292	0.96[ASN][1000 genomes]
rs7694484	1.00[ASN][1000 genomes]
rs7694622	0.98[ASN][1000 genomes]
rs7695271	1.00[ASN][1000 genomes]
rs7695375	1.00[ASN][1000 genomes]
rs978155	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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