Variant report

Variant	rs4428287
Chromosome Location	chr4:101757767-101757768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100871256..100872827-chr4:101757584..101760350,2	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10007981	0.92[ASN][1000 genomes]
rs10020201	0.84[ASN][1000 genomes]
rs13102608	1.00[ASN][1000 genomes]
rs13120027	1.00[ASN][1000 genomes]
rs13132028	1.00[ASN][1000 genomes]
rs13138965	1.00[ASN][1000 genomes]
rs17030522	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030525	1.00[ASN][1000 genomes]
rs17030528	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030531	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030534	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030541	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030548	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030550	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030551	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030553	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030554	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030557	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030560	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17030619	0.92[ASN][1000 genomes]
rs17030636	0.92[ASN][1000 genomes]
rs28444682	1.00[ASN][1000 genomes]
rs59485348	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62307686	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6830350	0.92[ASN][1000 genomes]
rs6831146	0.92[ASN][1000 genomes]
rs6835230	0.92[ASN][1000 genomes]
rs6835957	0.92[ASN][1000 genomes]
rs6840437	1.00[ASN][1000 genomes]
rs6853319	0.92[ASN][1000 genomes]
rs6853796	0.92[ASN][1000 genomes]
rs7658024	1.00[ASN][1000 genomes]
rs7659308	1.00[ASN][1000 genomes]
rs7667871	1.00[ASN][1000 genomes]
rs7676752	1.00[ASN][1000 genomes]
rs7677279	0.92[ASN][1000 genomes]
rs7677774	0.92[ASN][1000 genomes]
rs7678087	0.92[ASN][1000 genomes]
rs7678230	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101745400-101758800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:101753000-101758000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:101755000-101758200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:101757400-101758400	Enhancers	Liver	Liver

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