Variant report

Variant	rs28739492
Chromosome Location	chr4:8510282-8510283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8510207..8512745-chr4:8513756..8515974,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10008186	0.83[EUR][1000 genomes]
rs10009833	0.86[AMR][1000 genomes]
rs10012186	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10015429	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10029016	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10031818	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10938715	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11726253	0.84[ASN][1000 genomes]
rs11736150	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13105919	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16842416	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28536709	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28544429	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2972	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8501800-8510600	Enhancers	Ovary	ovary
2	chr4:8502800-8512800	Enhancers	Placenta	Placenta
3	chr4:8504200-8510600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:8504600-8510800	Enhancers	Fetal Muscle Leg	muscle
5	chr4:8507200-8512000	Weak transcription	Gastric	stomach
6	chr4:8508200-8511600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:8508400-8510400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:8509000-8519200	Weak transcription	Brain Germinal Matrix	brain
9	chr4:8509200-8511200	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:8509200-8513200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:8509400-8510400	Weak transcription	Brain Anterior Caudate	brain
12	chr4:8509400-8513200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:8509400-8514000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:8509400-8517200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:8509600-8510600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:8509600-8514200	Weak transcription	HSMMtube	muscle
17	chr4:8509600-8515200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:8509600-8515600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:8509800-8511600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr4:8510000-8515600	Weak transcription	NHDF-Ad	bronchial
21	chr4:8510200-8510400	Weak transcription	Spleen	Spleen
22	chr4:8510200-8510800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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