Variant report

Variant	rs28739499
Chromosome Location	chr11:120393635-120393636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120389366..120391441-chr11:120393017..120395812,2	K562	blood:
2	chr11:120392853..120394571-chr11:120399376..120402273,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10437691	1.00[AMR][1000 genomes]
rs10466597	1.00[AMR][1000 genomes]
rs11217894	1.00[AMR][1000 genomes]
rs12272851	1.00[AMR][1000 genomes]
rs12273736	1.00[AMR][1000 genomes]
rs12278707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280403	1.00[AMR][1000 genomes]
rs12283229	1.00[AMR][1000 genomes]
rs12285146	1.00[AMR][1000 genomes]
rs12286309	1.00[AMR][1000 genomes]
rs12288495	1.00[AMR][1000 genomes]
rs12288854	1.00[AMR][1000 genomes]
rs12288900	1.00[AMR][1000 genomes]
rs12290756	1.00[AMR][1000 genomes]
rs12291269	1.00[AMR][1000 genomes]
rs12294024	1.00[AMR][1000 genomes]
rs12294303	1.00[AMR][1000 genomes]
rs7943655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1051115	chr11:120376808-120446434	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv556475	chr11:120387828-120396485	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120387600-120394000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:120388200-120393800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:120388400-120394200	Weak transcription	Spleen	Spleen
4	chr11:120388400-120397600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:120388400-120397800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:120388800-120393800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:120388800-120403400	Weak transcription	Right Atrium	heart
8	chr11:120389000-120393800	Weak transcription	Fetal Kidney	kidney
9	chr11:120389000-120394200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:120389200-120393800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:120389200-120393800	Weak transcription	HSMMtube	muscle
12	chr11:120389200-120394000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:120392200-120394200	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:120393400-120394400	Enhancers	Ovary	ovary
15	chr11:120393400-120394600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:120393400-120394600	Enhancers	Primary B cells from peripheral blood	blood
17	chr11:120393400-120394600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr11:120393600-120393800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:120393600-120394400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:120393600-120394400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:120393600-120394600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:120393600-120394600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:120393600-120394600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:120393600-120394600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:120393600-120394600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr11:120393600-120394600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:120393600-120394600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:120393600-120394600	Bivalent Enhancer	Fetal Lung	lung
29	chr11:120393600-120394600	Enhancers	Placenta	Placenta
30	chr11:120393600-120394600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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