Variant report

Variant	rs7943655
Chromosome Location	chr11:120507996-120507997
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10437691	1.00[AMR][1000 genomes]
rs11217894	1.00[AMR][1000 genomes]
rs12273736	1.00[AMR][1000 genomes]
rs12278707	1.00[AMR][1000 genomes]
rs12280403	1.00[AMR][1000 genomes]
rs12288854	1.00[AMR][1000 genomes]
rs12294024	1.00[AMR][1000 genomes]
rs12294303	1.00[AMR][1000 genomes]
rs28739499	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120505400-120510800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:120505400-120512600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:120505800-120511600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:120506200-120511600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:120506200-120511800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:120506200-120512400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:120506400-120511400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:120506400-120511600	Weak transcription	Fetal Brain Female	brain
9	chr11:120507600-120508200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr11:120507600-120508200	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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