Variant report

Variant	rs28742086
Chromosome Location	chr15:74428632-74428633
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74427753..74430311-chr15:74603237..74605329,2	K562	blood:
2	chr15:74427374..74429740-chr15:74435764..74437591,2	MCF-7	breast:
3	chr15:74428424..74431158-chr15:74431458..74433273,2	MCF-7	breast:
4	chr15:74428007..74429693-chr15:74592908..74594435,2	MCF-7	breast:
5	chr15:74428468..74430311-chr15:74603033..74605329,2	K562	blood:
6	chr11:65270710..65271463-chr15:74428349..74429318,2	Hela-S3	cervix:
7	chr15:74420017..74422419-chr15:74427026..74430364,3	K562	blood:

Variant related genes	Relation type
ENSG00000167178	Chromatin interaction
ENSG00000248540	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16966892	1.00[AMR][1000 genomes]
rs28579824	1.00[AMR][1000 genomes]
rs55851895	1.00[AMR][1000 genomes]
rs8032260	1.00[AMR][1000 genomes]
rs9806292	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv469619	chr15:74291859-74466321	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv482362	chr15:74291859-74466321	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv1050884	chr15:74394983-74489413	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1047564	chr15:74408836-74458181	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv827385	chr15:74419539-74429301	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74425000-74429400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr15:74426600-74429200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:74426800-74429200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:74426800-74430000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
5	chr15:74427800-74429000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:74427800-74429000	Active TSS	Fetal Brain Female	brain
7	chr15:74427800-74429200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr15:74427800-74429200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr15:74427800-74429200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:74427800-74429600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr15:74428000-74428800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:74428000-74428800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
13	chr15:74428000-74428800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
14	chr15:74428000-74429000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:74428000-74429000	Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr15:74428000-74429000	Active TSS	A549	lung
17	chr15:74428000-74429000	Bivalent/Poised TSS	Osteobl	bone
18	chr15:74428000-74429200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:74428000-74429200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:74428000-74429200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr15:74428000-74429200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:74428000-74429200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:74428000-74429600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:74428000-74429800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
27	chr15:74428200-74428800	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
29	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
30	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
31	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
32	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Liver	Liver
35	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
36	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
37	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Placenta	Placenta
38	chr15:74428200-74428800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
39	chr15:74428200-74429000	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:74428200-74429000	Enhancers	Primary B cells from cord blood	blood
41	chr15:74428200-74429000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
42	chr15:74428200-74429000	Active TSS	HSMMtube	muscle
43	chr15:74428200-74429200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr15:74428200-74429200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:74428200-74429200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:74428200-74429200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr15:74428200-74429200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:74428200-74429200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
49	chr15:74428200-74429200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
50	chr15:74428200-74429200	Bivalent/Poised TSS	Brain Substantia Nigra	brain

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