Variant report

Variant	rs55851895
Chromosome Location	chr15:74339995-74339996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74284750..74286727-chr15:74339557..74341307,2	K562	blood:
2	chr15:74224754..74226933-chr15:74339515..74341343,2	MCF-7	breast:
3	chr15:74282684..74284862-chr15:74339446..74341891,2	K562	blood:

Variant related genes	Relation type
ENSG00000067221	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16966892	1.00[AMR][1000 genomes]
rs28579824	1.00[AMR][1000 genomes]
rs28742086	1.00[AMR][1000 genomes]
rs8032260	1.00[AMR][1000 genomes]
rs9806292	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv469619	chr15:74291859-74466321	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv482362	chr15:74291859-74466321	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv457203	chr15:74308940-74347723	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv569971	chr15:74308940-74347723	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv510666	chr15:74310738-74394745	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv817697	chr15:74336633-74343330	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv974597	chr15:74339226-74413654	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74316400-74340400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74318400-74340200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr15:74318400-74340400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:74326600-74340200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:74327800-74346000	Weak transcription	Psoas Muscle	Psoas
6	chr15:74328600-74346200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:74328800-74340000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:74329000-74344000	Weak transcription	Small Intestine	intestine
9	chr15:74329200-74340400	Weak transcription	Liver	Liver
10	chr15:74329200-74340600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:74329200-74343200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:74329400-74340200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:74329800-74340400	Weak transcription	Fetal Brain Male	brain
14	chr15:74329800-74340600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:74330000-74340400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:74330000-74340600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:74330000-74343000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:74330400-74340200	Weak transcription	Dnd41	blood
19	chr15:74330400-74340400	Weak transcription	GM12878-XiMat	blood
20	chr15:74330600-74340200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:74331600-74340400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:74332600-74340400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:74333000-74343000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:74333200-74340200	Weak transcription	Fetal Lung	lung
25	chr15:74333200-74340400	Weak transcription	NHEK	skin
26	chr15:74333200-74342600	Weak transcription	HMEC	breast
27	chr15:74333400-74340400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:74333400-74340400	Weak transcription	Right Atrium	heart
29	chr15:74333400-74341000	Weak transcription	HUVEC	blood vessel
30	chr15:74334000-74342600	Weak transcription	Pancreas	Pancrea
31	chr15:74334000-74346600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:74334200-74340200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:74334200-74342400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr15:74334400-74340400	Weak transcription	Fetal Kidney	kidney
35	chr15:74334800-74340400	Weak transcription	Stomach Mucosa	stomach
36	chr15:74335200-74340400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:74335400-74340400	Weak transcription	HSMM	muscle
38	chr15:74335600-74340400	Weak transcription	Osteobl	bone
39	chr15:74335800-74340400	Weak transcription	Brain Substantia Nigra	brain
40	chr15:74336000-74340400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:74336000-74340600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr15:74336000-74342600	Weak transcription	Fetal Intestine Large	intestine
43	chr15:74336200-74340200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:74336200-74346200	Weak transcription	Brain Angular Gyrus	brain
45	chr15:74336600-74340600	Weak transcription	Primary B cells from cord blood	blood
46	chr15:74336800-74346000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr15:74337000-74340400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:74337000-74343200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:74337000-74343200	Weak transcription	Ovary	ovary
50	chr15:74337200-74340200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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