Variant report

Variant	rs28750094
Chromosome Location	chr22:32866732-32866733
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32162110-32166713..22:32865649-32868055	Hela-S3	cervix:
2	chr22:32865878..32868084-chr22:32869727..32872318,3	K562	blood:
3	22:32012966-32043914..22:32865649-32868055	K562	blood:
4	chr22:32866340..32868922-chr22:32868961..32870500,2	K562	blood:

Variant related genes	Relation type
ENSG00000241878	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs5754096	1.00[AFR][1000 genomes]
rs5754103	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32864400-32866800	Enhancers	Fetal Brain Male	brain
2	chr22:32865200-32869800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:32866000-32869400	Weak transcription	Brain Substantia Nigra	brain
4	chr22:32866000-32869600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr22:32866000-32869800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr22:32866200-32867800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr22:32866200-32869200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr22:32866200-32869200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr22:32866200-32869400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr22:32866200-32869600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr22:32866200-32869600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr22:32866200-32869600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr22:32866200-32869600	Weak transcription	HSMMtube	muscle
14	chr22:32866200-32869600	Weak transcription	K562	blood
15	chr22:32866200-32869600	Weak transcription	NHLF	lung
16	chr22:32866200-32869800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr22:32866200-32869800	Weak transcription	HSMM	muscle
18	chr22:32866400-32868000	Weak transcription	A549	lung
19	chr22:32866400-32869200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr22:32866400-32869200	Weak transcription	Brain Hippocampus Middle	brain
21	chr22:32866400-32869400	Weak transcription	Colon Smooth Muscle	Colon
22	chr22:32866400-32869400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr22:32866400-32869600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr22:32866400-32869600	Weak transcription	Brain Anterior Caudate	brain
25	chr22:32866400-32869600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr22:32866400-32869600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr22:32866400-32869800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr22:32866600-32869600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr22:32866600-32869600	Weak transcription	Brain Angular Gyrus	brain
30	chr22:32866600-32869600	Weak transcription	NHDF-Ad	bronchial

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