Variant report

Variant	rs5754103
Chromosome Location	chr22:32856202-32856203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32170492-32188129..22:32846948-32860159	K562	blood:
2	22:32012966-32043914..22:32846948-32860159	K562	blood:
3	22:32846948-32860159..22:33190123-33206921	K562	blood:
4	chr22:32854735..32856753-chr22:32859853..32861743,2	K562	blood:
5	22:32102727-32109893..22:32846948-32860159	GM12878	blood:
6	22:32264718-32278135..22:32846948-32860159	GM12878	blood:
7	22:32342898-32343477..22:32846948-32860159	GM12878	blood:
8	22:32188129-32210582..22:32846948-32860159	K562	blood:
9	22:32740683-32750950..22:32846948-32860159	K562	blood:
10	22:32292186-32294405..22:32846948-32860159	Hela-S3	cervix:
11	22:32846948-32860159..22:33339333-33353583	K562	blood:
12	22:32846948-32860159..22:33262063-33266567	Hela-S3	cervix:
13	22:32477762-32487457..22:32846948-32860159	Hela-S3	cervix:
14	22:32846948-32860159..22:33452523-33459358	Hela-S3	cervix:

No data

No data

No data

Variant related genes	Relation type
ENSG00000100170	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000183530	Chromatin interaction
ENSG00000100234	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000128276	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11703361	1.00[JPT][hapmap]
rs28750094	1.00[AFR][1000 genomes]
rs5754096	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32856200-32856800	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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