Variant report

Variant	rs28754816
Chromosome Location	chr3:160484017-160484018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28404654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28434120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28435386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28460514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28461448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61745329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61746351	1.00[AFR][1000 genomes]
rs62272816	0.80[AFR][1000 genomes]
rs6766594	1.00[AMR][1000 genomes]
rs6767097	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6778473	1.00[AMR][1000 genomes]
rs6779470	1.00[AMR][1000 genomes]
rs6791115	1.00[AMR][1000 genomes]
rs6791258	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160475800-160497200	Weak transcription	Left Ventricle	heart
2	chr3:160476000-160496400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:160477400-160489600	Weak transcription	Fetal Heart	heart
4	chr3:160477600-160489800	Weak transcription	Brain Anterior Caudate	brain
5	chr3:160477600-160497000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:160477600-160498200	Weak transcription	Stomach Mucosa	stomach
7	chr3:160477800-160485600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:160477800-160488200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:160477800-160497800	Weak transcription	Brain Angular Gyrus	brain
10	chr3:160481600-160485800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:160482000-160486400	Weak transcription	Psoas Muscle	Psoas
12	chr3:160483400-160489800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:160483800-160488400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:160483800-160489400	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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