Variant report

Variant	rs6766594
Chromosome Location	chr3:160502056-160502057
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160472342..160475362-chr3:160501209..160504836,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163590	Chromatin interaction
ENSG00000260572	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28404654	1.00[AMR][1000 genomes]
rs28434120	1.00[AMR][1000 genomes]
rs28435386	1.00[AMR][1000 genomes]
rs28460514	1.00[AMR][1000 genomes]
rs28461448	1.00[AMR][1000 genomes]
rs28754816	1.00[AMR][1000 genomes]
rs61745329	1.00[AMR][1000 genomes]
rs6767097	1.00[AMR][1000 genomes]
rs6778473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791258	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160487200-160502200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:160495000-160502600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:160496600-160503400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:160498400-160522600	Weak transcription	Right Ventricle	heart
5	chr3:160498600-160502600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:160498600-160502600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:160499400-160502400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:160499400-160502600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:160499600-160502400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:160499600-160502400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:160499600-160502600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:160499800-160502600	Weak transcription	Dnd41	blood
13	chr3:160499800-160504400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:160500000-160502400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:160500200-160502200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:160500200-160502200	Weak transcription	Stomach Mucosa	stomach
17	chr3:160500200-160504000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:160500400-160502200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:160500400-160502400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:160501600-160503600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:160502000-160502600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr3:160502000-160502600	Enhancers	Colon Smooth Muscle	Colon
23	chr3:160502000-160503000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:160502000-160503400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr3:160502000-160503600	Enhancers	HUES6 Cell Line	embryonic stem cell

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