Variant report

Variant	rs28756928
Chromosome Location	chr4:110746395-110746396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:110746307-110747138	K562	blood:	n/a	n/a
2	POLR2A	chr4:110746378-110746917	K562	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110744505..110746809-chr4:110749659..110751838,2	K562	blood:
2	chr4:110736461..110738940-chr4:110744765..110747082,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CFI-2	chr4:110746298-110747043	NONHSAT097796

No data

Variant related genes	Relation type
RRH	TF binding region
ENSG00000109534	Chromatin interaction
ENSG00000272795	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10213104	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72892609	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110737600-110770600	Weak transcription	Aorta	Aorta
2	chr4:110737800-110746400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:110737800-110746600	Weak transcription	Esophagus	oesophagus
4	chr4:110737800-110748000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:110737800-110753200	Weak transcription	Lung	lung
6	chr4:110738000-110747200	Weak transcription	Gastric	stomach
7	chr4:110738000-110748400	Weak transcription	Small Intestine	intestine
8	chr4:110738000-110760800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:110738200-110746400	Weak transcription	Colonic Mucosa	Colon
10	chr4:110738200-110747800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:110738400-110748000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:110738400-110748000	Weak transcription	Ovary	ovary
13	chr4:110738400-110748400	Weak transcription	Right Ventricle	heart
14	chr4:110738400-110748600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:110738400-110757200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:110738600-110746800	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:110738600-110747000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:110738600-110747600	Weak transcription	Fetal Heart	heart
19	chr4:110738600-110748400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:110738800-110746800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:110738800-110746800	Strong transcription	Adipose Nuclei	Adipose
22	chr4:110738800-110747000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr4:110738800-110747000	Strong transcription	Fetal Thymus	thymus
24	chr4:110738800-110747000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr4:110738800-110747000	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr4:110738800-110747200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:110738800-110747200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr4:110738800-110747200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:110738800-110747600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:110738800-110748600	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:110739000-110746800	Strong transcription	HUVEC	blood vessel
32	chr4:110739000-110747000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:110739000-110747000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr4:110739000-110747000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:110739000-110747000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:110739000-110747000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr4:110739000-110747000	Strong transcription	K562	blood
38	chr4:110739000-110747000	Strong transcription	Osteobl	bone
39	chr4:110739000-110748400	Weak transcription	Fetal Brain Male	brain
40	chr4:110739000-110749800	Weak transcription	NHLF	lung
41	chr4:110739200-110746800	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr4:110739200-110747000	Strong transcription	Liver	Liver
43	chr4:110739200-110747200	Strong transcription	NH-A	brain
44	chr4:110739200-110748400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr4:110739200-110748600	Strong transcription	HSMM	muscle
46	chr4:110739400-110747000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr4:110739400-110747600	Strong transcription	Dnd41	blood
48	chr4:110739600-110746400	Strong transcription	Placenta	Placenta
49	chr4:110739600-110746800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr4:110739800-110747000	Strong transcription	Monocytes-CD14+_RO01746	blood

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