Variant report

Variant	rs10213104
Chromosome Location	chr4:110747184-110747185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110349880..110352137-chr4:110747017..110748778,2	K562	blood:
2	chr4:110746853..110748565-chr4:110758784..110761591,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28756928	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28871876	0.84[AFR][1000 genomes]
rs72892609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110737600-110770600	Weak transcription	Aorta	Aorta
2	chr4:110737800-110748000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:110737800-110753200	Weak transcription	Lung	lung
4	chr4:110738000-110747200	Weak transcription	Gastric	stomach
5	chr4:110738000-110748400	Weak transcription	Small Intestine	intestine
6	chr4:110738000-110760800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:110738200-110747800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:110738400-110748000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr4:110738400-110748000	Weak transcription	Ovary	ovary
10	chr4:110738400-110748400	Weak transcription	Right Ventricle	heart
11	chr4:110738400-110748600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:110738400-110757200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:110738600-110747600	Weak transcription	Fetal Heart	heart
14	chr4:110738600-110748400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:110738800-110747200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:110738800-110747200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:110738800-110747200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:110738800-110747600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:110738800-110748600	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:110739000-110748400	Weak transcription	Fetal Brain Male	brain
21	chr4:110739000-110749800	Weak transcription	NHLF	lung
22	chr4:110739200-110747200	Strong transcription	NH-A	brain
23	chr4:110739200-110748400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:110739200-110748600	Strong transcription	HSMM	muscle
25	chr4:110739400-110747600	Strong transcription	Dnd41	blood
26	chr4:110739800-110747600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr4:110740400-110747600	Weak transcription	Hela-S3	cervix
28	chr4:110740600-110747400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:110741000-110747200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr4:110741000-110753000	Weak transcription	Left Ventricle	heart
31	chr4:110742200-110753000	Weak transcription	Fetal Kidney	kidney
32	chr4:110742200-110764400	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:110742400-110747400	Weak transcription	Brain Germinal Matrix	brain
34	chr4:110742400-110747600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr4:110742400-110748000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr4:110742600-110748000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr4:110742600-110748000	Weak transcription	Brain Substantia Nigra	brain
38	chr4:110742600-110752400	Weak transcription	Fetal Muscle Leg	muscle
39	chr4:110743200-110747600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:110743800-110748000	Weak transcription	Thymus	Thymus
41	chr4:110744000-110748000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:110744000-110748600	Weak transcription	Pancreas	Pancrea
43	chr4:110744000-110759600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr4:110744400-110748200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:110744400-110748400	Weak transcription	HSMMtube	muscle
46	chr4:110744400-110748600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:110744400-110750600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr4:110744400-110774400	Weak transcription	Psoas Muscle	Psoas
49	chr4:110744600-110748000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:110744600-110748600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links