Variant report

Variant	rs28871876
Chromosome Location	chr4:110717968-110717969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10025263	1.00[AMR][1000 genomes]
rs10049638	1.00[AMR][1000 genomes]
rs10213104	0.84[AFR][1000 genomes]
rs13434654	1.00[AMR][1000 genomes]
rs28464381	1.00[AMR][1000 genomes]
rs28527183	1.00[AMR][1000 genomes]
rs28619233	1.00[AMR][1000 genomes]
rs28654134	1.00[AMR][1000 genomes]
rs58696480	1.00[AMR][1000 genomes]
rs72888476	1.00[AMR][1000 genomes]
rs72892609	0.84[AFR][1000 genomes]
rs9991131	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv966307	chr4:110708883-110721699	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110715000-110718800	ZNF genes & repeats	HepG2	liver
2	chr4:110715000-110721200	Weak transcription	Pancreas	Pancrea
3	chr4:110717600-110718000	ZNF genes & repeats	Fetal Intestine Small	intestine
4	chr4:110717600-110718000	Active TSS	Right Atrium	heart
5	chr4:110717600-110718400	ZNF genes & repeats	Liver	Liver
6	chr4:110717800-110718000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:110717800-110718200	Weak transcription	Lung	lung
8	chr4:110717800-110721600	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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